Hb_001946_020

Information

Type -
Description -
Location Contig1946: 13000-13417
Sequence    

Annotation

kegg
ID rcu:RCOM_0224470
description hypothetical protein
nr
ID XP_002524507.1
description hypothetical protein RCOM_0224470 [Ricinus communis]
swissprot
ID Q1G3V9
description EPIDERMAL PATTERNING FACTOR-like protein 8 OS=Arabidopsis thaliana GN=EPFL8 PE=1 SV=1
trembl
ID B9SET8
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0224470 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001946_020 0.0 - - hypothetical protein RCOM_0224470 [Ricinus communis]
2 Hb_007181_030 0.0415899234 - - PREDICTED: uncharacterized protein LOC105649502 isoform X2 [Jatropha curcas]
3 Hb_004267_030 0.0847173125 - - cytochrome P450, putative [Ricinus communis]
4 Hb_003095_080 0.1493408339 - - -
5 Hb_185111_010 0.2057754699 - - -
6 Hb_000318_090 0.2289575101 - - PREDICTED: uncharacterized protein LOC105179663 [Sesamum indicum]
7 Hb_000836_230 0.2642966347 - - Uncharacterized protein TCM_041879 [Theobroma cacao]
8 Hb_000087_090 0.2792188957 transcription factor TF Family: M-type PREDICTED: agamous-like MADS-box protein AGL61 [Jatropha curcas]
9 Hb_112440_010 0.2853268862 - - PREDICTED: uncharacterized protein LOC105629655 [Jatropha curcas]
10 Hb_000718_050 0.2864988632 - - PREDICTED: histone deacetylase 15 isoform X2 [Populus euphratica]
11 Hb_010921_040 0.2927610469 transcription factor TF Family: PLATZ PREDICTED: uncharacterized protein LOC105634154 [Jatropha curcas]
12 Hb_000032_580 0.3037704297 - - hypothetical protein RCOM_1311780 [Ricinus communis]
13 Hb_016875_010 0.3048033846 - - receptor protein kinase, putative [Ricinus communis]
14 Hb_008054_060 0.3093181666 - - PREDICTED: beta-amyrin synthase-like [Populus euphratica]
15 Hb_003266_070 0.3115685206 - - -
16 Hb_001195_750 0.3147847786 - - PREDICTED: protein TRANSPARENT TESTA 12 [Jatropha curcas]
17 Hb_000892_020 0.3180025607 - - unnamed protein product [Vitis vinifera]
18 Hb_001729_040 0.3198551041 - - hypothetical protein glysoja_049826, partial [Glycine soja]
19 Hb_000866_250 0.3331155307 - - acyl-CoA thioesterase, putative [Ricinus communis]
20 Hb_005656_110 0.3346956466 - - cytochrome P450, putative [Ricinus communis]

Gene co-expression network

sample Hb_001946_020 Hb_001946_020 Hb_007181_030 Hb_007181_030 Hb_001946_020--Hb_007181_030 Hb_004267_030 Hb_004267_030 Hb_001946_020--Hb_004267_030 Hb_003095_080 Hb_003095_080 Hb_001946_020--Hb_003095_080 Hb_185111_010 Hb_185111_010 Hb_001946_020--Hb_185111_010 Hb_000318_090 Hb_000318_090 Hb_001946_020--Hb_000318_090 Hb_000836_230 Hb_000836_230 Hb_001946_020--Hb_000836_230 Hb_007181_030--Hb_004267_030 Hb_007181_030--Hb_003095_080 Hb_007181_030--Hb_185111_010 Hb_007181_030--Hb_000318_090 Hb_000087_090 Hb_000087_090 Hb_007181_030--Hb_000087_090 Hb_004267_030--Hb_003095_080 Hb_016875_010 Hb_016875_010 Hb_004267_030--Hb_016875_010 Hb_004267_030--Hb_185111_010 Hb_010921_040 Hb_010921_040 Hb_004267_030--Hb_010921_040 Hb_003095_080--Hb_016875_010 Hb_008054_060 Hb_008054_060 Hb_003095_080--Hb_008054_060 Hb_112440_010 Hb_112440_010 Hb_003095_080--Hb_112440_010 Hb_185111_010--Hb_000318_090 Hb_000718_050 Hb_000718_050 Hb_185111_010--Hb_000718_050 Hb_000892_020 Hb_000892_020 Hb_185111_010--Hb_000892_020 Hb_001729_040 Hb_001729_040 Hb_185111_010--Hb_001729_040 Hb_185111_010--Hb_112440_010 Hb_000318_090--Hb_001729_040 Hb_000318_090--Hb_000892_020 Hb_000318_090--Hb_000718_050 Hb_000318_090--Hb_000087_090 Hb_007403_040 Hb_007403_040 Hb_000836_230--Hb_007403_040 Hb_000032_580 Hb_000032_580 Hb_000836_230--Hb_000032_580 Hb_020178_010 Hb_020178_010 Hb_000836_230--Hb_020178_010 Hb_031336_020 Hb_031336_020 Hb_000836_230--Hb_031336_020 Hb_007181_080 Hb_007181_080 Hb_000836_230--Hb_007181_080 Hb_001348_210 Hb_001348_210 Hb_000836_230--Hb_001348_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0.374087 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.23919 0 0.54341 0

CAGE analysis