Hb_031336_020

Information

Type -
Description -
Location Contig31336: 7074-7574
Sequence    

Annotation

kegg
ID rcu:RCOM_1037270
description hypothetical protein
nr
ID XP_002513964.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RJP5
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1037270 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33179: 7097-7315
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_031336_020 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_002301_420 0.1622703417 transcription factor TF Family: bHLH hypothetical protein POPTR_0011s05320g [Populus trichocarpa]
3 Hb_000402_220 0.1652219581 - - multidrug resistance pump, putative [Ricinus communis]
4 Hb_000380_210 0.1678684771 - - Cyclic nucleotide-gated channel 15 [Theobroma cacao]
5 Hb_000521_340 0.1741921287 - - PREDICTED: beta-glucosidase 13-like [Jatropha curcas]
6 Hb_025254_020 0.175688825 - - PREDICTED: formate dehydrogenase, mitochondrial [Vitis vinifera]
7 Hb_018133_110 0.1778438928 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
8 Hb_007181_080 0.1804663996 transcription factor TF Family: NAC transcription factor, putative [Ricinus communis]
9 Hb_000540_030 0.1833010478 - - Chitinase 1 precursor, putative [Ricinus communis]
10 Hb_049677_010 0.1873032477 - - hypothetical protein JCGZ_26658 [Jatropha curcas]
11 Hb_002042_200 0.1906877777 transcription factor TF Family: bHLH DNA binding protein, putative [Ricinus communis]
12 Hb_027634_010 0.1973442489 - - protein binding protein, putative [Ricinus communis]
13 Hb_006538_070 0.1975640345 - - hypothetical protein JCGZ_18339 [Jatropha curcas]
14 Hb_002597_010 0.1978632049 - - PREDICTED: putative disease resistance protein RGA1 [Malus domestica]
15 Hb_009771_070 0.1984861074 - - hypothetical protein POPTR_0016s12140g [Populus trichocarpa]
16 Hb_021418_010 0.1991063179 - - PREDICTED: probable pectate lyase 12 [Prunus mume]
17 Hb_164162_020 0.1998793542 - - PREDICTED: uncharacterized protein LOC105646964 [Jatropha curcas]
18 Hb_000099_020 0.2002174322 desease resistance Gene Name: ABC_membrane PREDICTED: uncharacterized protein LOC103431057 [Malus domestica]
19 Hb_004021_100 0.200535229 - - -
20 Hb_000175_480 0.2009145179 - - hypothetical protein JCGZ_06165 [Jatropha curcas]

Gene co-expression network

sample Hb_031336_020 Hb_031336_020 Hb_002301_420 Hb_002301_420 Hb_031336_020--Hb_002301_420 Hb_000402_220 Hb_000402_220 Hb_031336_020--Hb_000402_220 Hb_000380_210 Hb_000380_210 Hb_031336_020--Hb_000380_210 Hb_000521_340 Hb_000521_340 Hb_031336_020--Hb_000521_340 Hb_025254_020 Hb_025254_020 Hb_031336_020--Hb_025254_020 Hb_018133_110 Hb_018133_110 Hb_031336_020--Hb_018133_110 Hb_018591_010 Hb_018591_010 Hb_002301_420--Hb_018591_010 Hb_164283_010 Hb_164283_010 Hb_002301_420--Hb_164283_010 Hb_012368_080 Hb_012368_080 Hb_002301_420--Hb_012368_080 Hb_000540_030 Hb_000540_030 Hb_002301_420--Hb_000540_030 Hb_006637_040 Hb_006637_040 Hb_002301_420--Hb_006637_040 Hb_002301_420--Hb_018133_110 Hb_000513_110 Hb_000513_110 Hb_000402_220--Hb_000513_110 Hb_006538_070 Hb_006538_070 Hb_000402_220--Hb_006538_070 Hb_006538_050 Hb_006538_050 Hb_000402_220--Hb_006538_050 Hb_001366_250 Hb_001366_250 Hb_000402_220--Hb_001366_250 Hb_000120_710 Hb_000120_710 Hb_000402_220--Hb_000120_710 Hb_003786_060 Hb_003786_060 Hb_000402_220--Hb_003786_060 Hb_118707_020 Hb_118707_020 Hb_000380_210--Hb_118707_020 Hb_000967_010 Hb_000967_010 Hb_000380_210--Hb_000967_010 Hb_021418_010 Hb_021418_010 Hb_000380_210--Hb_021418_010 Hb_008727_030 Hb_008727_030 Hb_000380_210--Hb_008727_030 Hb_000380_210--Hb_018133_110 Hb_000032_560 Hb_000032_560 Hb_000380_210--Hb_000032_560 Hb_001971_070 Hb_001971_070 Hb_000521_340--Hb_001971_070 Hb_164162_020 Hb_164162_020 Hb_000521_340--Hb_164162_020 Hb_001901_010 Hb_001901_010 Hb_000521_340--Hb_001901_010 Hb_000521_340--Hb_006538_070 Hb_000948_070 Hb_000948_070 Hb_000521_340--Hb_000948_070 Hb_166813_010 Hb_166813_010 Hb_000521_340--Hb_166813_010 Hb_000099_020 Hb_000099_020 Hb_025254_020--Hb_000099_020 Hb_001959_030 Hb_001959_030 Hb_025254_020--Hb_001959_030 Hb_025254_020--Hb_018133_110 Hb_002042_200 Hb_002042_200 Hb_025254_020--Hb_002042_200 Hb_025254_020--Hb_000032_560 Hb_002016_020 Hb_002016_020 Hb_025254_020--Hb_002016_020 Hb_018133_110--Hb_000032_560 Hb_000347_230 Hb_000347_230 Hb_018133_110--Hb_000347_230 Hb_018133_110--Hb_002042_200 Hb_000580_070 Hb_000580_070 Hb_018133_110--Hb_000580_070 Hb_003734_120 Hb_003734_120 Hb_018133_110--Hb_003734_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.590271 0.36968 1.71431 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.267547 0.105095 0 4.49917 0

CAGE analysis