Hb_006538_070

Information

Type -
Description -
Location Contig6538: 35794-36888
Sequence    

Annotation

kegg
ID pop:POPTR_0008s12060g
description POPTRDRAFT_564538; hypothetical protein
nr
ID KDP29418.1
description hypothetical protein JCGZ_18339 [Jatropha curcas]
swissprot
ID Q5GHF7
description Adenylate isopentenyltransferase OS=Humulus lupulus PE=1 SV=1
trembl
ID A0A067K2Z5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18339 PE=4 SV=1
Gene Ontology
ID GO:0008033
description adenylate isopentenyltransferase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006538_070 0.0 - - hypothetical protein JCGZ_18339 [Jatropha curcas]
2 Hb_164162_020 0.0302758317 - - PREDICTED: uncharacterized protein LOC105646964 [Jatropha curcas]
3 Hb_001901_010 0.0897996481 - - PREDICTED: alpha carbonic anhydrase 7-like [Jatropha curcas]
4 Hb_000948_070 0.0990372426 - - hypothetical protein POPTR_0016s01720g [Populus trichocarpa]
5 Hb_006538_050 0.0995315147 - - hypothetical protein RCOM_1308310 [Ricinus communis]
6 Hb_001971_070 0.1011883628 - - unnamed protein product [Coffea canephora]
7 Hb_000005_270 0.1022130745 - - Xyloglucan endotransglucosylase/hydrolase protein 2 precursor, putative [Ricinus communis]
8 Hb_000120_710 0.1118787738 - - unnamed protein product [Vitis vinifera]
9 Hb_003786_060 0.1190744232 - - PREDICTED: transmembrane protein 220 [Jatropha curcas]
10 Hb_001218_020 0.126249265 transcription factor TF Family: MYB hypothetical protein POPTR_0005s17080g [Populus trichocarpa]
11 Hb_000521_340 0.126868307 - - PREDICTED: beta-glucosidase 13-like [Jatropha curcas]
12 Hb_006153_200 0.1277700901 - - Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein [Theobroma cacao]
13 Hb_166813_010 0.1303303959 - - hypothetical protein JCGZ_24970 [Jatropha curcas]
14 Hb_004324_200 0.1327634792 - - PREDICTED: transcription factor TRY-like [Populus euphratica]
15 Hb_000347_530 0.1330222085 transcription factor TF Family: MYB PREDICTED: transcription factor MYB114-like [Jatropha curcas]
16 Hb_045992_010 0.1334303429 - - -
17 Hb_002232_400 0.1358643874 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH25-like [Jatropha curcas]
18 Hb_000175_480 0.1387754513 - - hypothetical protein JCGZ_06165 [Jatropha curcas]
19 Hb_002999_090 0.1406669984 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000567_310 0.1410675709 - - Miraculin precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_006538_070 Hb_006538_070 Hb_164162_020 Hb_164162_020 Hb_006538_070--Hb_164162_020 Hb_001901_010 Hb_001901_010 Hb_006538_070--Hb_001901_010 Hb_000948_070 Hb_000948_070 Hb_006538_070--Hb_000948_070 Hb_006538_050 Hb_006538_050 Hb_006538_070--Hb_006538_050 Hb_001971_070 Hb_001971_070 Hb_006538_070--Hb_001971_070 Hb_000005_270 Hb_000005_270 Hb_006538_070--Hb_000005_270 Hb_164162_020--Hb_001901_010 Hb_164162_020--Hb_001971_070 Hb_164162_020--Hb_000948_070 Hb_166813_010 Hb_166813_010 Hb_164162_020--Hb_166813_010 Hb_164162_020--Hb_006538_050 Hb_002999_090 Hb_002999_090 Hb_001901_010--Hb_002999_090 Hb_001901_010--Hb_001971_070 Hb_006153_200 Hb_006153_200 Hb_001901_010--Hb_006153_200 Hb_003462_150 Hb_003462_150 Hb_001901_010--Hb_003462_150 Hb_004544_080 Hb_004544_080 Hb_001901_010--Hb_004544_080 Hb_000539_080 Hb_000539_080 Hb_000948_070--Hb_000539_080 Hb_000567_310 Hb_000567_310 Hb_000948_070--Hb_000567_310 Hb_002900_070 Hb_002900_070 Hb_000948_070--Hb_002900_070 Hb_000948_070--Hb_006538_050 Hb_076895_020 Hb_076895_020 Hb_000948_070--Hb_076895_020 Hb_003786_060 Hb_003786_060 Hb_006538_050--Hb_003786_060 Hb_000120_710 Hb_000120_710 Hb_006538_050--Hb_000120_710 Hb_001328_110 Hb_001328_110 Hb_006538_050--Hb_001328_110 Hb_003052_070 Hb_003052_070 Hb_006538_050--Hb_003052_070 Hb_006538_050--Hb_000567_310 Hb_000617_340 Hb_000617_340 Hb_006538_050--Hb_000617_340 Hb_001971_070--Hb_004544_080 Hb_001971_070--Hb_003462_150 Hb_001971_070--Hb_002999_090 Hb_000120_440 Hb_000120_440 Hb_000005_270--Hb_000120_440 Hb_000513_110 Hb_000513_110 Hb_000005_270--Hb_000513_110 Hb_045992_010 Hb_045992_010 Hb_000005_270--Hb_045992_010 Hb_000021_090 Hb_000021_090 Hb_000005_270--Hb_000021_090 Hb_000005_270--Hb_000120_710 Hb_009545_040 Hb_009545_040 Hb_000005_270--Hb_009545_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0595002 0.0156542 0.128078 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.586466 0

CAGE analysis