Hb_000521_340

Information

Type -
Description -
Location Contig521: 255965-257065
Sequence    

Annotation

kegg
ID cam:101513528
description beta-glucosidase 12-like
nr
ID XP_012065488.1
description PREDICTED: beta-glucosidase 13-like [Jatropha curcas]
swissprot
ID Q9M1D0
description Beta-glucosidase 16 OS=Arabidopsis thaliana GN=BGLU16 PE=2 SV=1
trembl
ID A0A067LGV0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16701 PE=3 SV=1
Gene Ontology
ID GO:0016787
description cyanogenic beta-

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46731: 254061-257908 , PASA_asmbl_46732: 254061-257525
cDNA
(Sanger)
(ID:Location)		 021_M04.ab1: 254061-256200

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000521_340 0.0 - - PREDICTED: beta-glucosidase 13-like [Jatropha curcas]
2 Hb_001971_070 0.1170281722 - - unnamed protein product [Coffea canephora]
3 Hb_164162_020 0.1172571358 - - PREDICTED: uncharacterized protein LOC105646964 [Jatropha curcas]
4 Hb_001901_010 0.1248387429 - - PREDICTED: alpha carbonic anhydrase 7-like [Jatropha curcas]
5 Hb_006538_070 0.126868307 - - hypothetical protein JCGZ_18339 [Jatropha curcas]
6 Hb_000948_070 0.1339747314 - - hypothetical protein POPTR_0016s01720g [Populus trichocarpa]
7 Hb_166813_010 0.1478219071 - - hypothetical protein JCGZ_24970 [Jatropha curcas]
8 Hb_004544_080 0.1486871262 - - lectin protein kinase [Populus trichocarpa]
9 Hb_002999_090 0.1490069226 - - conserved hypothetical protein [Ricinus communis]
10 Hb_003462_150 0.1492508755 - - PREDICTED: chitinase 1-like [Eucalyptus grandis]
11 Hb_006153_200 0.1530714916 - - Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein [Theobroma cacao]
12 Hb_002475_020 0.1545524872 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570 isoform X1 [Populus euphratica]
13 Hb_002900_070 0.1569532454 - - conserved hypothetical protein [Ricinus communis]
14 Hb_031340_030 0.1571044966 - - PREDICTED: L-type lectin-domain containing receptor kinase IV.1 [Jatropha curcas]
15 Hb_000141_230 0.1584188136 - - PREDICTED: 14 kDa proline-rich protein DC2.15-like [Camelina sativa]
16 Hb_000005_270 0.1607865782 - - Xyloglucan endotransglucosylase/hydrolase protein 2 precursor, putative [Ricinus communis]
17 Hb_006538_050 0.1623095776 - - hypothetical protein RCOM_1308310 [Ricinus communis]
18 Hb_001218_020 0.1635012799 transcription factor TF Family: MYB hypothetical protein POPTR_0005s17080g [Populus trichocarpa]
19 Hb_005064_040 0.1640488361 - - hypothetical protein POPTR_0008s02680g [Populus trichocarpa]
20 Hb_000175_480 0.1644650173 - - hypothetical protein JCGZ_06165 [Jatropha curcas]

Gene co-expression network

sample Hb_000521_340 Hb_000521_340 Hb_001971_070 Hb_001971_070 Hb_000521_340--Hb_001971_070 Hb_164162_020 Hb_164162_020 Hb_000521_340--Hb_164162_020 Hb_001901_010 Hb_001901_010 Hb_000521_340--Hb_001901_010 Hb_006538_070 Hb_006538_070 Hb_000521_340--Hb_006538_070 Hb_000948_070 Hb_000948_070 Hb_000521_340--Hb_000948_070 Hb_166813_010 Hb_166813_010 Hb_000521_340--Hb_166813_010 Hb_001971_070--Hb_001901_010 Hb_001971_070--Hb_164162_020 Hb_004544_080 Hb_004544_080 Hb_001971_070--Hb_004544_080 Hb_003462_150 Hb_003462_150 Hb_001971_070--Hb_003462_150 Hb_001971_070--Hb_006538_070 Hb_002999_090 Hb_002999_090 Hb_001971_070--Hb_002999_090 Hb_164162_020--Hb_006538_070 Hb_164162_020--Hb_001901_010 Hb_164162_020--Hb_000948_070 Hb_164162_020--Hb_166813_010 Hb_006538_050 Hb_006538_050 Hb_164162_020--Hb_006538_050 Hb_001901_010--Hb_002999_090 Hb_006153_200 Hb_006153_200 Hb_001901_010--Hb_006153_200 Hb_001901_010--Hb_003462_150 Hb_001901_010--Hb_004544_080 Hb_006538_070--Hb_001901_010 Hb_006538_070--Hb_000948_070 Hb_006538_070--Hb_006538_050 Hb_000005_270 Hb_000005_270 Hb_006538_070--Hb_000005_270 Hb_000539_080 Hb_000539_080 Hb_000948_070--Hb_000539_080 Hb_000567_310 Hb_000567_310 Hb_000948_070--Hb_000567_310 Hb_002900_070 Hb_002900_070 Hb_000948_070--Hb_002900_070 Hb_000948_070--Hb_006538_050 Hb_076895_020 Hb_076895_020 Hb_000948_070--Hb_076895_020 Hb_002475_020 Hb_002475_020 Hb_166813_010--Hb_002475_020 Hb_166813_010--Hb_000948_070 Hb_000608_080 Hb_000608_080 Hb_166813_010--Hb_000608_080 Hb_000141_230 Hb_000141_230 Hb_166813_010--Hb_000141_230 Hb_166813_010--Hb_004544_080 Hb_000238_060 Hb_000238_060 Hb_166813_010--Hb_000238_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.041971 2.08226 0.191485 3.20948 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.194708 0.153031 0.134303 14.3509 0

CAGE analysis