Hb_000402_220

Information

Type -
Description -
Location Contig402: 216427-218251
Sequence    

Annotation

kegg
ID rcu:RCOM_0024820
description multidrug resistance pump, putative
nr
ID XP_002527924.1
description multidrug resistance pump, putative [Ricinus communis]
swissprot
ID Q9LYT3
description Protein TRANSPARENT TESTA 12 OS=Arabidopsis thaliana GN=TT12 PE=2 SV=1
trembl
ID B9SPK5
description MATE efflux family protein OS=Ricinus communis GN=RCOM_0024820 PE=3 SV=1
Gene Ontology
ID GO:0016021
description protein transparent testa 12-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000402_220 0.0 - - multidrug resistance pump, putative [Ricinus communis]
2 Hb_000513_110 0.1486480327 - - PREDICTED: germin-like protein subfamily 1 member 13 [Populus euphratica]
3 Hb_006538_070 0.1531419097 - - hypothetical protein JCGZ_18339 [Jatropha curcas]
4 Hb_006538_050 0.1541444441 - - hypothetical protein RCOM_1308310 [Ricinus communis]
5 Hb_001366_250 0.1568012568 - - PREDICTED: mannan endo-1,4-beta-mannosidase 4-like [Jatropha curcas]
6 Hb_000120_710 0.1590190769 - - unnamed protein product [Vitis vinifera]
7 Hb_003786_060 0.159309058 - - PREDICTED: transmembrane protein 220 [Jatropha curcas]
8 Hb_000005_270 0.1611703876 - - Xyloglucan endotransglucosylase/hydrolase protein 2 precursor, putative [Ricinus communis]
9 Hb_002232_370 0.1642309263 - - PREDICTED: receptor-like protein kinase HAIKU2 [Jatropha curcas]
10 Hb_031336_020 0.1652219581 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000521_340 0.1658237054 - - PREDICTED: beta-glucosidase 13-like [Jatropha curcas]
12 Hb_000617_340 0.1665439492 - - respiratory burst oxidase B [Manihot esculenta]
13 Hb_164162_020 0.1665865911 - - PREDICTED: uncharacterized protein LOC105646964 [Jatropha curcas]
14 Hb_000933_200 0.1666121042 - - Cationic peroxidase 2 precursor, putative [Ricinus communis]
15 Hb_000347_530 0.1686909946 transcription factor TF Family: MYB PREDICTED: transcription factor MYB114-like [Jatropha curcas]
16 Hb_001544_040 0.1745342295 - - PREDICTED: uncharacterized protein At1g66480-like [Populus euphratica]
17 Hb_002301_420 0.1755420743 transcription factor TF Family: bHLH hypothetical protein POPTR_0011s05320g [Populus trichocarpa]
18 Hb_003253_020 0.1759738968 transcription factor TF Family: B3 transcription factor, putative [Ricinus communis]
19 Hb_049677_010 0.177792789 - - hypothetical protein JCGZ_26658 [Jatropha curcas]
20 Hb_004324_200 0.1785220969 - - PREDICTED: transcription factor TRY-like [Populus euphratica]

Gene co-expression network

sample Hb_000402_220 Hb_000402_220 Hb_000513_110 Hb_000513_110 Hb_000402_220--Hb_000513_110 Hb_006538_070 Hb_006538_070 Hb_000402_220--Hb_006538_070 Hb_006538_050 Hb_006538_050 Hb_000402_220--Hb_006538_050 Hb_001366_250 Hb_001366_250 Hb_000402_220--Hb_001366_250 Hb_000120_710 Hb_000120_710 Hb_000402_220--Hb_000120_710 Hb_003786_060 Hb_003786_060 Hb_000402_220--Hb_003786_060 Hb_000513_110--Hb_000120_710 Hb_003253_020 Hb_003253_020 Hb_000513_110--Hb_003253_020 Hb_000617_340 Hb_000617_340 Hb_000513_110--Hb_000617_340 Hb_001544_040 Hb_001544_040 Hb_000513_110--Hb_001544_040 Hb_007527_020 Hb_007527_020 Hb_000513_110--Hb_007527_020 Hb_001901_090 Hb_001901_090 Hb_000513_110--Hb_001901_090 Hb_164162_020 Hb_164162_020 Hb_006538_070--Hb_164162_020 Hb_001901_010 Hb_001901_010 Hb_006538_070--Hb_001901_010 Hb_000948_070 Hb_000948_070 Hb_006538_070--Hb_000948_070 Hb_006538_070--Hb_006538_050 Hb_001971_070 Hb_001971_070 Hb_006538_070--Hb_001971_070 Hb_000005_270 Hb_000005_270 Hb_006538_070--Hb_000005_270 Hb_006538_050--Hb_003786_060 Hb_006538_050--Hb_000120_710 Hb_001328_110 Hb_001328_110 Hb_006538_050--Hb_001328_110 Hb_003052_070 Hb_003052_070 Hb_006538_050--Hb_003052_070 Hb_000567_310 Hb_000567_310 Hb_006538_050--Hb_000567_310 Hb_006538_050--Hb_000617_340 Hb_005000_310 Hb_005000_310 Hb_001366_250--Hb_005000_310 Hb_029510_110 Hb_029510_110 Hb_001366_250--Hb_029510_110 Hb_004445_090 Hb_004445_090 Hb_001366_250--Hb_004445_090 Hb_001366_250--Hb_007527_020 Hb_000281_200 Hb_000281_200 Hb_001366_250--Hb_000281_200 Hb_000739_130 Hb_000739_130 Hb_001366_250--Hb_000739_130 Hb_000120_710--Hb_001328_110 Hb_000120_710--Hb_001544_040 Hb_000120_710--Hb_000617_340 Hb_000120_710--Hb_003253_020 Hb_003786_060--Hb_003052_070 Hb_007747_030 Hb_007747_030 Hb_003786_060--Hb_007747_030 Hb_003786_060--Hb_000567_310 Hb_003786_060--Hb_001328_110 Hb_000933_200 Hb_000933_200 Hb_003786_060--Hb_000933_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0896295 0.0574622 0.190817 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0585519 0 0 1.18869 0

CAGE analysis