Hb_001959_030

Information

Type -
Description -
Location Contig1959: 32630-33865
Sequence    

Annotation

kegg
ID rcu:RCOM_1023950
description hypothetical protein
nr
ID XP_002518193.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RWS4
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1023950 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001959_030 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_002042_200 0.1094780755 transcription factor TF Family: bHLH DNA binding protein, putative [Ricinus communis]
3 Hb_025254_020 0.1234362402 - - PREDICTED: formate dehydrogenase, mitochondrial [Vitis vinifera]
4 Hb_002016_020 0.1283294965 - - RALFL33, putative [Ricinus communis]
5 Hb_018133_110 0.132846713 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
6 Hb_001369_620 0.1353698297 - - PREDICTED: protein EXORDIUM-like 3 [Jatropha curcas]
7 Hb_000175_480 0.136512868 - - hypothetical protein JCGZ_06165 [Jatropha curcas]
8 Hb_001623_400 0.1387226516 - - conserved hypothetical protein [Ricinus communis]
9 Hb_027634_010 0.1432261954 - - protein binding protein, putative [Ricinus communis]
10 Hb_000556_140 0.1445249689 transcription factor TF Family: GRF PREDICTED: growth-regulating factor 9 [Jatropha curcas]
11 Hb_004122_030 0.1487195202 transcription factor TF Family: HB PREDICTED: WUSCHEL-related homeobox 4-like [Populus euphratica]
12 Hb_000003_510 0.1494292463 - - PREDICTED: uncharacterized protein LOC105631555 [Jatropha curcas]
13 Hb_000580_070 0.1498122704 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At5g10290 [Jatropha curcas]
14 Hb_000041_290 0.1499234987 - - Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis]
15 Hb_011214_120 0.1500314152 - - PREDICTED: uncharacterized protein LOC105636139 [Jatropha curcas]
16 Hb_017491_040 0.1521880269 - - PREDICTED: uncharacterized protein LOC105631348 [Jatropha curcas]
17 Hb_000032_560 0.1529167848 - - hypothetical protein JCGZ_15037 [Jatropha curcas]
18 Hb_000915_070 0.1543500328 - - ATP binding protein, putative [Ricinus communis]
19 Hb_003205_030 0.1598849427 - - Pectinesterase inhibitor, putative [Ricinus communis]
20 Hb_002597_010 0.1614533441 - - PREDICTED: putative disease resistance protein RGA1 [Malus domestica]

Gene co-expression network

sample Hb_001959_030 Hb_001959_030 Hb_002042_200 Hb_002042_200 Hb_001959_030--Hb_002042_200 Hb_025254_020 Hb_025254_020 Hb_001959_030--Hb_025254_020 Hb_002016_020 Hb_002016_020 Hb_001959_030--Hb_002016_020 Hb_018133_110 Hb_018133_110 Hb_001959_030--Hb_018133_110 Hb_001369_620 Hb_001369_620 Hb_001959_030--Hb_001369_620 Hb_000175_480 Hb_000175_480 Hb_001959_030--Hb_000175_480 Hb_001623_400 Hb_001623_400 Hb_002042_200--Hb_001623_400 Hb_002042_200--Hb_018133_110 Hb_002042_200--Hb_000175_480 Hb_027634_010 Hb_027634_010 Hb_002042_200--Hb_027634_010 Hb_017491_040 Hb_017491_040 Hb_002042_200--Hb_017491_040 Hb_000099_020 Hb_000099_020 Hb_025254_020--Hb_000099_020 Hb_025254_020--Hb_018133_110 Hb_025254_020--Hb_002042_200 Hb_000032_560 Hb_000032_560 Hb_025254_020--Hb_000032_560 Hb_025254_020--Hb_002016_020 Hb_002016_020--Hb_001369_620 Hb_135811_040 Hb_135811_040 Hb_002016_020--Hb_135811_040 Hb_002016_020--Hb_000032_560 Hb_002597_010 Hb_002597_010 Hb_002016_020--Hb_002597_010 Hb_000580_070 Hb_000580_070 Hb_002016_020--Hb_000580_070 Hb_018133_110--Hb_000032_560 Hb_000347_230 Hb_000347_230 Hb_018133_110--Hb_000347_230 Hb_018133_110--Hb_000580_070 Hb_002301_420 Hb_002301_420 Hb_018133_110--Hb_002301_420 Hb_003734_120 Hb_003734_120 Hb_018133_110--Hb_003734_120 Hb_000003_510 Hb_000003_510 Hb_001369_620--Hb_000003_510 Hb_001053_110 Hb_001053_110 Hb_001369_620--Hb_001053_110 Hb_001369_620--Hb_003734_120 Hb_003805_080 Hb_003805_080 Hb_001369_620--Hb_003805_080 Hb_001963_020 Hb_001963_020 Hb_001369_620--Hb_001963_020 Hb_000175_480--Hb_027634_010 Hb_000441_170 Hb_000441_170 Hb_000175_480--Hb_000441_170 Hb_002232_400 Hb_002232_400 Hb_000175_480--Hb_002232_400 Hb_002900_070 Hb_002900_070 Hb_000175_480--Hb_002900_070 Hb_098795_010 Hb_098795_010 Hb_000175_480--Hb_098795_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.670052 3.98905 2.55132 7.20548 0.574501 0.365475
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.126772 0.099687 0 22.1974 0.201029

CAGE analysis