Hb_000087_090

Information

Type transcription factor
Description TF Family: M-type
Location Contig87: 184736-185374
Sequence    

Annotation

kegg
ID rcu:RCOM_1382320
description mads box protein, putative
nr
ID XP_012072794.1
description PREDICTED: agamous-like MADS-box protein AGL61 [Jatropha curcas]
swissprot
ID Q9FKK2
description Agamous-like MADS-box protein AGL62 OS=Arabidopsis thaliana GN=AGL62 PE=1 SV=1
trembl
ID A0A067KN98
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06965 PE=4 SV=1
Gene Ontology
ID GO:0005634
description agamous-like mads-box protein agl62

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000087_090 0.0 transcription factor TF Family: M-type PREDICTED: agamous-like MADS-box protein AGL61 [Jatropha curcas]
2 Hb_003266_070 0.1729637327 - - -
3 Hb_185111_010 0.2053148727 - - -
4 Hb_000318_090 0.2100460257 - - PREDICTED: uncharacterized protein LOC105179663 [Sesamum indicum]
5 Hb_000892_020 0.2401287107 - - unnamed protein product [Vitis vinifera]
6 Hb_000718_050 0.2423429435 - - PREDICTED: histone deacetylase 15 isoform X2 [Populus euphratica]
7 Hb_001729_040 0.248908985 - - hypothetical protein glysoja_049826, partial [Glycine soja]
8 Hb_007181_030 0.2595003258 - - PREDICTED: uncharacterized protein LOC105649502 isoform X2 [Jatropha curcas]
9 Hb_164646_010 0.2651145515 - - PREDICTED: acidic endochitinase-like [Pyrus x bretschneideri]
10 Hb_001143_150 0.2774716081 - - PREDICTED: mitochondrial protein import protein MAS5-like [Populus euphratica]
11 Hb_001946_020 0.2792188957 - - hypothetical protein RCOM_0224470 [Ricinus communis]
12 Hb_112440_010 0.2819587393 - - PREDICTED: uncharacterized protein LOC105629655 [Jatropha curcas]
13 Hb_003643_030 0.2840958479 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RGA2-like [Populus euphratica]
14 Hb_002338_030 0.2904309011 - - PREDICTED: 60S acidic ribosomal protein P1-like [Tarenaya hassleriana]
15 Hb_003095_080 0.2998297753 - - -
16 Hb_000836_230 0.309537386 - - Uncharacterized protein TCM_041879 [Theobroma cacao]
17 Hb_004267_030 0.3125408534 - - cytochrome P450, putative [Ricinus communis]
18 Hb_000032_580 0.3178068012 - - hypothetical protein RCOM_1311780 [Ricinus communis]
19 Hb_160246_010 0.3219000436 - - calcium ion binding protein, putative [Ricinus communis]
20 Hb_000112_100 0.3236585749 - - glutamate receptor 2 plant, putative [Ricinus communis]

Gene co-expression network

sample Hb_000087_090 Hb_000087_090 Hb_003266_070 Hb_003266_070 Hb_000087_090--Hb_003266_070 Hb_185111_010 Hb_185111_010 Hb_000087_090--Hb_185111_010 Hb_000318_090 Hb_000318_090 Hb_000087_090--Hb_000318_090 Hb_000892_020 Hb_000892_020 Hb_000087_090--Hb_000892_020 Hb_000718_050 Hb_000718_050 Hb_000087_090--Hb_000718_050 Hb_001729_040 Hb_001729_040 Hb_000087_090--Hb_001729_040 Hb_003643_030 Hb_003643_030 Hb_003266_070--Hb_003643_030 Hb_001754_160 Hb_001754_160 Hb_003266_070--Hb_001754_160 Hb_001143_150 Hb_001143_150 Hb_003266_070--Hb_001143_150 Hb_011099_010 Hb_011099_010 Hb_003266_070--Hb_011099_010 Hb_160246_010 Hb_160246_010 Hb_003266_070--Hb_160246_010 Hb_185111_010--Hb_000318_090 Hb_185111_010--Hb_000718_050 Hb_185111_010--Hb_000892_020 Hb_185111_010--Hb_001729_040 Hb_112440_010 Hb_112440_010 Hb_185111_010--Hb_112440_010 Hb_007181_030 Hb_007181_030 Hb_185111_010--Hb_007181_030 Hb_000318_090--Hb_001729_040 Hb_000318_090--Hb_000892_020 Hb_000318_090--Hb_000718_050 Hb_000318_090--Hb_007181_030 Hb_000892_020--Hb_000718_050 Hb_000892_020--Hb_001729_040 Hb_000892_020--Hb_112440_010 Hb_015220_010 Hb_015220_010 Hb_000892_020--Hb_015220_010 Hb_000718_050--Hb_112440_010 Hb_008054_060 Hb_008054_060 Hb_000718_050--Hb_008054_060 Hb_000718_050--Hb_001729_040 Hb_000164_060 Hb_000164_060 Hb_001729_040--Hb_000164_060 Hb_001729_040--Hb_015220_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0301726 0.0829312 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.144736 0 0.118294 0

CAGE analysis