Hb_000892_020

Information

Type -
Description -
Location Contig892: 23179-31396
Sequence    

Annotation

kegg
ID cam:101506028
description uncharacterized LOC101506028
nr
ID CBI24830.3
description unnamed protein product [Vitis vinifera]
swissprot
ID Q5Z9Z0
description Beta-glucosidase 24 OS=Oryza sativa subsp. japonica GN=BGLU24 PE=2 SV=1
trembl
ID F6HB85
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_13s0064g01580 PE=3 SV=1
Gene Ontology
ID GO:0004553
description beta-glucosidase 12

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000892_020 0.0 - - unnamed protein product [Vitis vinifera]
2 Hb_000718_050 0.087791613 - - PREDICTED: histone deacetylase 15 isoform X2 [Populus euphratica]
3 Hb_185111_010 0.1151543888 - - -
4 Hb_000318_090 0.128925768 - - PREDICTED: uncharacterized protein LOC105179663 [Sesamum indicum]
5 Hb_001729_040 0.1358604655 - - hypothetical protein glysoja_049826, partial [Glycine soja]
6 Hb_112440_010 0.1883116575 - - PREDICTED: uncharacterized protein LOC105629655 [Jatropha curcas]
7 Hb_015220_010 0.2047628501 - - PREDICTED: ribonuclease 3-like protein 3 [Jatropha curcas]
8 Hb_000164_060 0.2149551061 - - -
9 Hb_000087_090 0.2401287107 transcription factor TF Family: M-type PREDICTED: agamous-like MADS-box protein AGL61 [Jatropha curcas]
10 Hb_008054_060 0.2588478315 - - PREDICTED: beta-amyrin synthase-like [Populus euphratica]
11 Hb_003960_020 0.2773593392 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
12 Hb_007181_030 0.2913810021 - - PREDICTED: uncharacterized protein LOC105649502 isoform X2 [Jatropha curcas]
13 Hb_000622_320 0.2981391274 - - PREDICTED: chitinase 1-like [Vitis vinifera]
14 Hb_164646_010 0.3061602678 - - PREDICTED: acidic endochitinase-like [Pyrus x bretschneideri]
15 Hb_003095_080 0.3073791707 - - -
16 Hb_006469_120 0.3080089501 - - hypothetical protein POPTR_0005s16430g [Populus trichocarpa]
17 Hb_001946_020 0.3180025607 - - hypothetical protein RCOM_0224470 [Ricinus communis]
18 Hb_003266_070 0.3357987967 - - -
19 Hb_011016_040 0.344282291 - - calcium-dependent protein kinase, putative [Ricinus communis]
20 Hb_000143_040 0.3442823611 - - PREDICTED: cytochrome P450 81E8-like [Jatropha curcas]

Gene co-expression network

sample Hb_000892_020 Hb_000892_020 Hb_000718_050 Hb_000718_050 Hb_000892_020--Hb_000718_050 Hb_185111_010 Hb_185111_010 Hb_000892_020--Hb_185111_010 Hb_000318_090 Hb_000318_090 Hb_000892_020--Hb_000318_090 Hb_001729_040 Hb_001729_040 Hb_000892_020--Hb_001729_040 Hb_112440_010 Hb_112440_010 Hb_000892_020--Hb_112440_010 Hb_015220_010 Hb_015220_010 Hb_000892_020--Hb_015220_010 Hb_000718_050--Hb_112440_010 Hb_000718_050--Hb_185111_010 Hb_000718_050--Hb_000318_090 Hb_008054_060 Hb_008054_060 Hb_000718_050--Hb_008054_060 Hb_000718_050--Hb_001729_040 Hb_185111_010--Hb_000318_090 Hb_185111_010--Hb_001729_040 Hb_185111_010--Hb_112440_010 Hb_007181_030 Hb_007181_030 Hb_185111_010--Hb_007181_030 Hb_000318_090--Hb_001729_040 Hb_000318_090--Hb_007181_030 Hb_000087_090 Hb_000087_090 Hb_000318_090--Hb_000087_090 Hb_000164_060 Hb_000164_060 Hb_001729_040--Hb_000164_060 Hb_001729_040--Hb_015220_010 Hb_112440_010--Hb_008054_060 Hb_004947_010 Hb_004947_010 Hb_112440_010--Hb_004947_010 Hb_003095_080 Hb_003095_080 Hb_112440_010--Hb_003095_080 Hb_003960_020 Hb_003960_020 Hb_015220_010--Hb_003960_020 Hb_015220_010--Hb_000164_060 Hb_015220_010--Hb_000718_050 Hb_015220_010--Hb_000318_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0.00460552 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0118416 0 0.00469768 0

CAGE analysis