Hb_003095_080

Information

Type -
Description -
Location Contig3095: 60323-60749
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003095_080 0.0 - - -
2 Hb_004267_030 0.0923690154 - - cytochrome P450, putative [Ricinus communis]
3 Hb_001946_020 0.1493408339 - - hypothetical protein RCOM_0224470 [Ricinus communis]
4 Hb_016875_010 0.1608583295 - - receptor protein kinase, putative [Ricinus communis]
5 Hb_007181_030 0.172727174 - - PREDICTED: uncharacterized protein LOC105649502 isoform X2 [Jatropha curcas]
6 Hb_008054_060 0.1850304076 - - PREDICTED: beta-amyrin synthase-like [Populus euphratica]
7 Hb_112440_010 0.1890288842 - - PREDICTED: uncharacterized protein LOC105629655 [Jatropha curcas]
8 Hb_185111_010 0.2151672846 - - -
9 Hb_004947_010 0.2232198847 - - PREDICTED: receptor-like protein 12 [Jatropha curcas]
10 Hb_000718_050 0.2405527876 - - PREDICTED: histone deacetylase 15 isoform X2 [Populus euphratica]
11 Hb_010921_040 0.2541432294 transcription factor TF Family: PLATZ PREDICTED: uncharacterized protein LOC105634154 [Jatropha curcas]
12 Hb_003266_070 0.267312419 - - -
13 Hb_000318_090 0.2761698054 - - PREDICTED: uncharacterized protein LOC105179663 [Sesamum indicum]
14 Hb_001754_160 0.2850634996 - - PREDICTED: flowering-promoting factor 1-like protein 3 [Jatropha curcas]
15 Hb_000160_050 0.2902782182 - - hypothetical protein JCGZ_02516 [Jatropha curcas]
16 Hb_005306_120 0.2995841452 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000087_090 0.2998297753 transcription factor TF Family: M-type PREDICTED: agamous-like MADS-box protein AGL61 [Jatropha curcas]
18 Hb_000892_020 0.3073791707 - - unnamed protein product [Vitis vinifera]
19 Hb_003643_030 0.3081476475 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RGA2-like [Populus euphratica]
20 Hb_002067_130 0.3115961784 - - putative non-LTR retroelement reverse transcriptase [Arabidopsis thaliana]

Gene co-expression network

sample Hb_003095_080 Hb_003095_080 Hb_004267_030 Hb_004267_030 Hb_003095_080--Hb_004267_030 Hb_001946_020 Hb_001946_020 Hb_003095_080--Hb_001946_020 Hb_016875_010 Hb_016875_010 Hb_003095_080--Hb_016875_010 Hb_007181_030 Hb_007181_030 Hb_003095_080--Hb_007181_030 Hb_008054_060 Hb_008054_060 Hb_003095_080--Hb_008054_060 Hb_112440_010 Hb_112440_010 Hb_003095_080--Hb_112440_010 Hb_004267_030--Hb_001946_020 Hb_004267_030--Hb_007181_030 Hb_004267_030--Hb_016875_010 Hb_185111_010 Hb_185111_010 Hb_004267_030--Hb_185111_010 Hb_010921_040 Hb_010921_040 Hb_004267_030--Hb_010921_040 Hb_001946_020--Hb_007181_030 Hb_001946_020--Hb_185111_010 Hb_000318_090 Hb_000318_090 Hb_001946_020--Hb_000318_090 Hb_000836_230 Hb_000836_230 Hb_001946_020--Hb_000836_230 Hb_004947_010 Hb_004947_010 Hb_016875_010--Hb_004947_010 Hb_000160_050 Hb_000160_050 Hb_016875_010--Hb_000160_050 Hb_016875_010--Hb_008054_060 Hb_033153_080 Hb_033153_080 Hb_016875_010--Hb_033153_080 Hb_094529_020 Hb_094529_020 Hb_016875_010--Hb_094529_020 Hb_007181_030--Hb_185111_010 Hb_007181_030--Hb_000318_090 Hb_000087_090 Hb_000087_090 Hb_007181_030--Hb_000087_090 Hb_008054_060--Hb_112440_010 Hb_008054_060--Hb_004947_010 Hb_000718_050 Hb_000718_050 Hb_008054_060--Hb_000718_050 Hb_008054_060--Hb_185111_010 Hb_112440_010--Hb_000718_050 Hb_112440_010--Hb_185111_010 Hb_112440_010--Hb_004947_010 Hb_000892_020 Hb_000892_020 Hb_112440_010--Hb_000892_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0.700224 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.327962 0 0.458214 0

CAGE analysis