Hb_008054_060

Information

Type -
Description -
Location Contig8054: 71847-77467
Sequence    

Annotation

kegg
ID pop:POPTR_0004s01550g
description POPTRDRAFT_800325; putative oxidosqualene cyclase family protein
nr
ID XP_011037652.1
description PREDICTED: beta-amyrin synthase-like [Populus euphratica]
swissprot
ID Q764T8
description Lupeol synthase OS=Glycyrrhiza glabra GN=LUS1 PE=1 SV=1
trembl
ID A0A059BXW2
description Terpene cyclase/mutase family member OS=Eucalyptus grandis GN=EUGRSUZ_F04049 PE=3 SV=1
Gene Ontology
ID GO:0003824
description oxidosqualene cyclase family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008054_060 0.0 - - PREDICTED: beta-amyrin synthase-like [Populus euphratica]
2 Hb_112440_010 0.0722826506 - - PREDICTED: uncharacterized protein LOC105629655 [Jatropha curcas]
3 Hb_004947_010 0.1161128953 - - PREDICTED: receptor-like protein 12 [Jatropha curcas]
4 Hb_016875_010 0.1613937647 - - receptor protein kinase, putative [Ricinus communis]
5 Hb_000718_050 0.1730445987 - - PREDICTED: histone deacetylase 15 isoform X2 [Populus euphratica]
6 Hb_003095_080 0.1850304076 - - -
7 Hb_185111_010 0.2355449028 - - -
8 Hb_000892_020 0.2588478315 - - unnamed protein product [Vitis vinifera]
9 Hb_094529_020 0.2644287893 - - leucine-rich repeat containing protein, putative [Ricinus communis]
10 Hb_033153_080 0.2682608795 - - PREDICTED: anthocyanidin 3-O-glucoside 2''-O-glucosyltransferase-like [Populus euphratica]
11 Hb_004267_030 0.2740303913 - - cytochrome P450, putative [Ricinus communis]
12 Hb_132840_120 0.2752729638 - - Vacuolar protein sorting-associated protein 8 like [Glycine soja]
13 Hb_012092_070 0.2756410216 - - PREDICTED: uncharacterized protein LOC105644084 [Jatropha curcas]
14 Hb_003266_070 0.2809206041 - - -
15 Hb_019818_010 0.2824642497 - - PREDICTED: potassium transporter 5-like [Jatropha curcas]
16 Hb_001633_190 0.2860499475 - - PREDICTED: probable methyltransferase PMT11 [Jatropha curcas]
17 Hb_004728_030 0.2885201124 - - hypothetical protein, partial [Lactobacillus brevis]
18 Hb_017400_010 0.2926626067 - - unnamed protein product [Vitis vinifera]
19 Hb_000160_050 0.2931394401 - - hypothetical protein JCGZ_02516 [Jatropha curcas]
20 Hb_001894_080 0.3075599929 - - ATP binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_008054_060 Hb_008054_060 Hb_112440_010 Hb_112440_010 Hb_008054_060--Hb_112440_010 Hb_004947_010 Hb_004947_010 Hb_008054_060--Hb_004947_010 Hb_016875_010 Hb_016875_010 Hb_008054_060--Hb_016875_010 Hb_000718_050 Hb_000718_050 Hb_008054_060--Hb_000718_050 Hb_003095_080 Hb_003095_080 Hb_008054_060--Hb_003095_080 Hb_185111_010 Hb_185111_010 Hb_008054_060--Hb_185111_010 Hb_112440_010--Hb_000718_050 Hb_112440_010--Hb_185111_010 Hb_112440_010--Hb_004947_010 Hb_000892_020 Hb_000892_020 Hb_112440_010--Hb_000892_020 Hb_112440_010--Hb_003095_080 Hb_004947_010--Hb_016875_010 Hb_033153_080 Hb_033153_080 Hb_004947_010--Hb_033153_080 Hb_094529_020 Hb_094529_020 Hb_004947_010--Hb_094529_020 Hb_000160_050 Hb_000160_050 Hb_004947_010--Hb_000160_050 Hb_016875_010--Hb_000160_050 Hb_016875_010--Hb_003095_080 Hb_016875_010--Hb_033153_080 Hb_016875_010--Hb_094529_020 Hb_000718_050--Hb_000892_020 Hb_000718_050--Hb_185111_010 Hb_000318_090 Hb_000318_090 Hb_000718_050--Hb_000318_090 Hb_001729_040 Hb_001729_040 Hb_000718_050--Hb_001729_040 Hb_004267_030 Hb_004267_030 Hb_003095_080--Hb_004267_030 Hb_001946_020 Hb_001946_020 Hb_003095_080--Hb_001946_020 Hb_007181_030 Hb_007181_030 Hb_003095_080--Hb_007181_030 Hb_185111_010--Hb_000318_090 Hb_185111_010--Hb_000892_020 Hb_185111_010--Hb_001729_040 Hb_185111_010--Hb_007181_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0.0599811 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.041456 0 0.0166844 0

CAGE analysis