Hb_000718_050

Information

Type -
Description -
Location Contig718: 127161-132821
Sequence    

Annotation

kegg
ID rcu:RCOM_1617710
description histone deacetylase hda1, putative
nr
ID XP_011009790.1
description PREDICTED: histone deacetylase 15 isoform X2 [Populus euphratica]
swissprot
ID Q8GXJ1
description Histone deacetylase 15 OS=Arabidopsis thaliana GN=HDA15 PE=2 SV=2
trembl
ID U5FU48
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0012s05730g PE=4 SV=1
Gene Ontology
ID GO:0017136
description histone deacetylase 15 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55509: 131391-131728
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000718_050 0.0 - - PREDICTED: histone deacetylase 15 isoform X2 [Populus euphratica]
2 Hb_000892_020 0.087791613 - - unnamed protein product [Vitis vinifera]
3 Hb_112440_010 0.1013948742 - - PREDICTED: uncharacterized protein LOC105629655 [Jatropha curcas]
4 Hb_185111_010 0.1064277624 - - -
5 Hb_000318_090 0.1646731526 - - PREDICTED: uncharacterized protein LOC105179663 [Sesamum indicum]
6 Hb_008054_060 0.1730445987 - - PREDICTED: beta-amyrin synthase-like [Populus euphratica]
7 Hb_001729_040 0.2096529125 - - hypothetical protein glysoja_049826, partial [Glycine soja]
8 Hb_003095_080 0.2405527876 - - -
9 Hb_000087_090 0.2423429435 transcription factor TF Family: M-type PREDICTED: agamous-like MADS-box protein AGL61 [Jatropha curcas]
10 Hb_015220_010 0.2465736051 - - PREDICTED: ribonuclease 3-like protein 3 [Jatropha curcas]
11 Hb_007181_030 0.2694373281 - - PREDICTED: uncharacterized protein LOC105649502 isoform X2 [Jatropha curcas]
12 Hb_001946_020 0.2864988632 - - hypothetical protein RCOM_0224470 [Ricinus communis]
13 Hb_000164_060 0.2865277416 - - -
14 Hb_004947_010 0.2871433502 - - PREDICTED: receptor-like protein 12 [Jatropha curcas]
15 Hb_003266_070 0.2937531537 - - -
16 Hb_004267_030 0.2992111267 - - cytochrome P450, putative [Ricinus communis]
17 Hb_016875_010 0.3112753794 - - receptor protein kinase, putative [Ricinus communis]
18 Hb_003960_020 0.3177120893 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
19 Hb_000622_320 0.3268436946 - - PREDICTED: chitinase 1-like [Vitis vinifera]
20 Hb_000866_250 0.3301049078 - - acyl-CoA thioesterase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000718_050 Hb_000718_050 Hb_000892_020 Hb_000892_020 Hb_000718_050--Hb_000892_020 Hb_112440_010 Hb_112440_010 Hb_000718_050--Hb_112440_010 Hb_185111_010 Hb_185111_010 Hb_000718_050--Hb_185111_010 Hb_000318_090 Hb_000318_090 Hb_000718_050--Hb_000318_090 Hb_008054_060 Hb_008054_060 Hb_000718_050--Hb_008054_060 Hb_001729_040 Hb_001729_040 Hb_000718_050--Hb_001729_040 Hb_000892_020--Hb_185111_010 Hb_000892_020--Hb_000318_090 Hb_000892_020--Hb_001729_040 Hb_000892_020--Hb_112440_010 Hb_015220_010 Hb_015220_010 Hb_000892_020--Hb_015220_010 Hb_112440_010--Hb_008054_060 Hb_112440_010--Hb_185111_010 Hb_004947_010 Hb_004947_010 Hb_112440_010--Hb_004947_010 Hb_003095_080 Hb_003095_080 Hb_112440_010--Hb_003095_080 Hb_185111_010--Hb_000318_090 Hb_185111_010--Hb_001729_040 Hb_007181_030 Hb_007181_030 Hb_185111_010--Hb_007181_030 Hb_000318_090--Hb_001729_040 Hb_000318_090--Hb_007181_030 Hb_000087_090 Hb_000087_090 Hb_000318_090--Hb_000087_090 Hb_008054_060--Hb_004947_010 Hb_016875_010 Hb_016875_010 Hb_008054_060--Hb_016875_010 Hb_008054_060--Hb_003095_080 Hb_008054_060--Hb_185111_010 Hb_000164_060 Hb_000164_060 Hb_001729_040--Hb_000164_060 Hb_001729_040--Hb_015220_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0.12286 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.194885 0 0.0806713 0

CAGE analysis