Hb_000318_090

Information

Type -
Description -
Location Contig318: 77788-83552
Sequence    

Annotation

kegg
ID gmx:102663992
description uncharacterized LOC102663992
nr
ID XP_011101607.1
description PREDICTED: uncharacterized protein LOC105179663 [Sesamum indicum]
swissprot
ID P03364
description Pol polyprotein OS=Squirrel monkey retrovirus GN=pol PE=3 SV=2
trembl
ID Q5WMZ8
description Putative uncharacterized protein P0001A07.10 OS=Oryza sativa subsp. japonica GN=P0001A07.10 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000318_090 0.0 - - PREDICTED: uncharacterized protein LOC105179663 [Sesamum indicum]
2 Hb_185111_010 0.0761371789 - - -
3 Hb_001729_040 0.0970410857 - - hypothetical protein glysoja_049826, partial [Glycine soja]
4 Hb_000892_020 0.128925768 - - unnamed protein product [Vitis vinifera]
5 Hb_000718_050 0.1646731526 - - PREDICTED: histone deacetylase 15 isoform X2 [Populus euphratica]
6 Hb_007181_030 0.1931797431 - - PREDICTED: uncharacterized protein LOC105649502 isoform X2 [Jatropha curcas]
7 Hb_000087_090 0.2100460257 transcription factor TF Family: M-type PREDICTED: agamous-like MADS-box protein AGL61 [Jatropha curcas]
8 Hb_001946_020 0.2289575101 - - hypothetical protein RCOM_0224470 [Ricinus communis]
9 Hb_112440_010 0.2435560799 - - PREDICTED: uncharacterized protein LOC105629655 [Jatropha curcas]
10 Hb_015220_010 0.2558768226 - - PREDICTED: ribonuclease 3-like protein 3 [Jatropha curcas]
11 Hb_003095_080 0.2761698054 - - -
12 Hb_004267_030 0.2853989054 - - cytochrome P450, putative [Ricinus communis]
13 Hb_003960_020 0.2949569765 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
14 Hb_000032_580 0.2976853372 - - hypothetical protein RCOM_1311780 [Ricinus communis]
15 Hb_000164_060 0.2989095386 - - -
16 Hb_008054_060 0.3084955811 - - PREDICTED: beta-amyrin synthase-like [Populus euphratica]
17 Hb_083103_030 0.3177801376 - - putative retrotransposon protein [Malus domestica]
18 Hb_103832_030 0.3178006502 - - PREDICTED: uncharacterized protein LOC105795045 [Gossypium raimondii]
19 Hb_172503_010 0.3178101278 - - PREDICTED: uncharacterized protein LOC105647154 [Jatropha curcas]
20 Hb_115472_010 0.3183244933 - - -

Gene co-expression network

sample Hb_000318_090 Hb_000318_090 Hb_185111_010 Hb_185111_010 Hb_000318_090--Hb_185111_010 Hb_001729_040 Hb_001729_040 Hb_000318_090--Hb_001729_040 Hb_000892_020 Hb_000892_020 Hb_000318_090--Hb_000892_020 Hb_000718_050 Hb_000718_050 Hb_000318_090--Hb_000718_050 Hb_007181_030 Hb_007181_030 Hb_000318_090--Hb_007181_030 Hb_000087_090 Hb_000087_090 Hb_000318_090--Hb_000087_090 Hb_185111_010--Hb_000718_050 Hb_185111_010--Hb_000892_020 Hb_185111_010--Hb_001729_040 Hb_112440_010 Hb_112440_010 Hb_185111_010--Hb_112440_010 Hb_185111_010--Hb_007181_030 Hb_001729_040--Hb_000892_020 Hb_001729_040--Hb_000718_050 Hb_000164_060 Hb_000164_060 Hb_001729_040--Hb_000164_060 Hb_015220_010 Hb_015220_010 Hb_001729_040--Hb_015220_010 Hb_000892_020--Hb_000718_050 Hb_000892_020--Hb_112440_010 Hb_000892_020--Hb_015220_010 Hb_000718_050--Hb_112440_010 Hb_008054_060 Hb_008054_060 Hb_000718_050--Hb_008054_060 Hb_001946_020 Hb_001946_020 Hb_007181_030--Hb_001946_020 Hb_004267_030 Hb_004267_030 Hb_007181_030--Hb_004267_030 Hb_003095_080 Hb_003095_080 Hb_007181_030--Hb_003095_080 Hb_007181_030--Hb_000087_090 Hb_003266_070 Hb_003266_070 Hb_000087_090--Hb_003266_070 Hb_000087_090--Hb_185111_010 Hb_000087_090--Hb_000892_020 Hb_000087_090--Hb_000718_050 Hb_000087_090--Hb_001729_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0.00405262 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.00977141 0 0.00774506 0

CAGE analysis