Hb_004267_030

Information

Type -
Description -
Location Contig4267: 51989-53858
Sequence    

Annotation

kegg
ID rcu:RCOM_1592830
description cytochrome P450, putative (EC:1.14.13.88)
nr
ID XP_002510305.1
description cytochrome P450, putative [Ricinus communis]
swissprot
ID O49858
description Cytochrome P450 82A3 OS=Glycine max GN=CYP82A3 PE=2 SV=1
trembl
ID B9R7L2
description Cytochrome P450, putative OS=Ricinus communis GN=RCOM_1592830 PE=3 SV=1
Gene Ontology
ID GO:0005506
description cytochrome p450 cyp82d47-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004267_030 0.0 - - cytochrome P450, putative [Ricinus communis]
2 Hb_001946_020 0.0847173125 - - hypothetical protein RCOM_0224470 [Ricinus communis]
3 Hb_003095_080 0.0923690154 - - -
4 Hb_007181_030 0.1229179461 - - PREDICTED: uncharacterized protein LOC105649502 isoform X2 [Jatropha curcas]
5 Hb_016875_010 0.2339616546 - - receptor protein kinase, putative [Ricinus communis]
6 Hb_185111_010 0.243211853 - - -
7 Hb_010921_040 0.2559575192 transcription factor TF Family: PLATZ PREDICTED: uncharacterized protein LOC105634154 [Jatropha curcas]
8 Hb_112440_010 0.2691976329 - - PREDICTED: uncharacterized protein LOC105629655 [Jatropha curcas]
9 Hb_008054_060 0.2740303913 - - PREDICTED: beta-amyrin synthase-like [Populus euphratica]
10 Hb_000318_090 0.2853989054 - - PREDICTED: uncharacterized protein LOC105179663 [Sesamum indicum]
11 Hb_000836_230 0.2866880844 - - Uncharacterized protein TCM_041879 [Theobroma cacao]
12 Hb_000718_050 0.2992111267 - - PREDICTED: histone deacetylase 15 isoform X2 [Populus euphratica]
13 Hb_003266_070 0.2995193093 - - -
14 Hb_007227_010 0.3022204245 - - hypothetical protein BN927_00890 [Lactococcus lactis subsp. lactis Dephy 1]
15 Hb_005714_080 0.3022495005 transcription factor TF Family: B3 PREDICTED: uncharacterized protein LOC105109431 [Populus euphratica]
16 Hb_052135_010 0.3022776882 - - PREDICTED: phytochrome B isoform X2 [Jatropha curcas]
17 Hb_170365_010 0.302279555 - - Retrotransposon protein, putative [Theobroma cacao]
18 Hb_183433_020 0.3022914202 - - PREDICTED: uncharacterized protein LOC105851424 [Cicer arietinum]
19 Hb_181803_010 0.3023185238 - - TRANSPARENT TESTA 12 protein, putative [Ricinus communis]
20 Hb_004000_030 0.3023203219 - - putative retrotransposon protein [Phyllostachys edulis]

Gene co-expression network

sample Hb_004267_030 Hb_004267_030 Hb_001946_020 Hb_001946_020 Hb_004267_030--Hb_001946_020 Hb_003095_080 Hb_003095_080 Hb_004267_030--Hb_003095_080 Hb_007181_030 Hb_007181_030 Hb_004267_030--Hb_007181_030 Hb_016875_010 Hb_016875_010 Hb_004267_030--Hb_016875_010 Hb_185111_010 Hb_185111_010 Hb_004267_030--Hb_185111_010 Hb_010921_040 Hb_010921_040 Hb_004267_030--Hb_010921_040 Hb_001946_020--Hb_007181_030 Hb_001946_020--Hb_003095_080 Hb_001946_020--Hb_185111_010 Hb_000318_090 Hb_000318_090 Hb_001946_020--Hb_000318_090 Hb_000836_230 Hb_000836_230 Hb_001946_020--Hb_000836_230 Hb_003095_080--Hb_016875_010 Hb_003095_080--Hb_007181_030 Hb_008054_060 Hb_008054_060 Hb_003095_080--Hb_008054_060 Hb_112440_010 Hb_112440_010 Hb_003095_080--Hb_112440_010 Hb_007181_030--Hb_185111_010 Hb_007181_030--Hb_000318_090 Hb_000087_090 Hb_000087_090 Hb_007181_030--Hb_000087_090 Hb_004947_010 Hb_004947_010 Hb_016875_010--Hb_004947_010 Hb_000160_050 Hb_000160_050 Hb_016875_010--Hb_000160_050 Hb_016875_010--Hb_008054_060 Hb_033153_080 Hb_033153_080 Hb_016875_010--Hb_033153_080 Hb_094529_020 Hb_094529_020 Hb_016875_010--Hb_094529_020 Hb_185111_010--Hb_000318_090 Hb_000718_050 Hb_000718_050 Hb_185111_010--Hb_000718_050 Hb_000892_020 Hb_000892_020 Hb_185111_010--Hb_000892_020 Hb_001729_040 Hb_001729_040 Hb_185111_010--Hb_001729_040 Hb_185111_010--Hb_112440_010 Hb_000110_380 Hb_000110_380 Hb_010921_040--Hb_000110_380 Hb_064122_010 Hb_064122_010 Hb_010921_040--Hb_064122_010 Hb_001170_010 Hb_001170_010 Hb_010921_040--Hb_001170_010 Hb_004724_450 Hb_004724_450 Hb_010921_040--Hb_004724_450 Hb_010921_040--Hb_003095_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0.0580616 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0236961 0 0.0567273 0

CAGE analysis