Hb_003960_020

Information

Type -
Description -
Location Contig3960: 39954-42768
Sequence    

Annotation

kegg
ID tcc:TCM_009549
description DNA/RNA polymerases superfamily protein
nr
ID XP_007044250.1
description DNA/RNA polymerases superfamily protein [Theobroma cacao]
swissprot
ID Q7LHG5
description Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY3B-I PE=3 SV=2
trembl
ID A0A061E6T4
description DNA/RNA polymerases superfamily protein OS=Theobroma cacao GN=TCM_009549 PE=4 SV=1
Gene Ontology
ID GO:0003676
description dna rna polymerases superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003960_020 0.0 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
2 Hb_015220_010 0.1005310315 - - PREDICTED: ribonuclease 3-like protein 3 [Jatropha curcas]
3 Hb_007101_290 0.2272986762 transcription factor TF Family: C2H2 conserved hypothetical protein [Ricinus communis]
4 Hb_001703_110 0.2423113977 - - PREDICTED: putative ribonuclease H protein At1g65750 [Malus domestica]
5 Hb_001729_040 0.2682081548 - - hypothetical protein glysoja_049826, partial [Glycine soja]
6 Hb_009813_080 0.2717253752 - - hypothetical protein CISIN_1g045991mg [Citrus sinensis]
7 Hb_000892_020 0.2773593392 - - unnamed protein product [Vitis vinifera]
8 Hb_002311_170 0.2791696646 - - PREDICTED: BTB/POZ and MATH domain-containing protein 2-like [Eucalyptus grandis]
9 Hb_000318_090 0.2949569765 - - PREDICTED: uncharacterized protein LOC105179663 [Sesamum indicum]
10 Hb_000164_060 0.2975499779 - - -
11 Hb_003052_230 0.2989642477 - - conserved hypothetical protein [Ricinus communis]
12 Hb_006420_090 0.299527208 - - PREDICTED: zinc finger protein 5 [Jatropha curcas]
13 Hb_026687_030 0.3006918839 - - hypothetical protein AMTR_s00038p00220080 [Amborella trichopoda]
14 Hb_008479_020 0.3125730422 - - PREDICTED: uncharacterized protein LOC105436302 [Cucumis sativus]
15 Hb_185111_010 0.3134574305 - - -
16 Hb_000718_050 0.3177120893 - - PREDICTED: histone deacetylase 15 isoform X2 [Populus euphratica]
17 Hb_033834_050 0.3217796322 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000787_040 0.3250759981 - - PREDICTED: uncharacterized protein LOC105115900 isoform X1 [Populus euphratica]
19 Hb_002918_130 0.3277480799 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor 12 [Jatropha curcas]
20 Hb_092891_010 0.3293104187 - - 2-nonaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase [Theobroma cacao]

Gene co-expression network

sample Hb_003960_020 Hb_003960_020 Hb_015220_010 Hb_015220_010 Hb_003960_020--Hb_015220_010 Hb_007101_290 Hb_007101_290 Hb_003960_020--Hb_007101_290 Hb_001703_110 Hb_001703_110 Hb_003960_020--Hb_001703_110 Hb_001729_040 Hb_001729_040 Hb_003960_020--Hb_001729_040 Hb_009813_080 Hb_009813_080 Hb_003960_020--Hb_009813_080 Hb_000892_020 Hb_000892_020 Hb_003960_020--Hb_000892_020 Hb_015220_010--Hb_000892_020 Hb_015220_010--Hb_001729_040 Hb_000164_060 Hb_000164_060 Hb_015220_010--Hb_000164_060 Hb_000718_050 Hb_000718_050 Hb_015220_010--Hb_000718_050 Hb_000318_090 Hb_000318_090 Hb_015220_010--Hb_000318_090 Hb_007101_290--Hb_001703_110 Hb_006420_090 Hb_006420_090 Hb_007101_290--Hb_006420_090 Hb_000032_580 Hb_000032_580 Hb_007101_290--Hb_000032_580 Hb_002918_130 Hb_002918_130 Hb_007101_290--Hb_002918_130 Hb_008479_020 Hb_008479_020 Hb_007101_290--Hb_008479_020 Hb_000813_150 Hb_000813_150 Hb_001703_110--Hb_000813_150 Hb_169492_020 Hb_169492_020 Hb_001703_110--Hb_169492_020 Hb_000772_060 Hb_000772_060 Hb_001703_110--Hb_000772_060 Hb_001703_110--Hb_002918_130 Hb_001729_040--Hb_000318_090 Hb_001729_040--Hb_000892_020 Hb_185111_010 Hb_185111_010 Hb_001729_040--Hb_185111_010 Hb_001729_040--Hb_000718_050 Hb_001729_040--Hb_000164_060 Hb_002311_170 Hb_002311_170 Hb_009813_080--Hb_002311_170 Hb_009813_080--Hb_008479_020 Hb_001085_100 Hb_001085_100 Hb_009813_080--Hb_001085_100 Hb_003052_230 Hb_003052_230 Hb_009813_080--Hb_003052_230 Hb_011077_020 Hb_011077_020 Hb_009813_080--Hb_011077_020 Hb_000892_020--Hb_000718_050 Hb_000892_020--Hb_185111_010 Hb_000892_020--Hb_000318_090 Hb_112440_010 Hb_112440_010 Hb_000892_020--Hb_112440_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.00685558 0 0.00584939 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0297153 0 0.0118055 0

CAGE analysis