Hb_000813_150

Information

Type -
Description -
Location Contig813: 126245-129112
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59303: 125107-126714
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000813_150 0.0 - - -
2 Hb_002067_130 0.2162209139 - - putative non-LTR retroelement reverse transcriptase [Arabidopsis thaliana]
3 Hb_010883_220 0.2237584035 - - PREDICTED: flavonol synthase/flavanone 3-hydroxylase-like [Prunus mume]
4 Hb_009252_120 0.2288387545 - - conserved hypothetical protein [Ricinus communis]
5 Hb_001703_110 0.23301545 - - PREDICTED: putative ribonuclease H protein At1g65750 [Malus domestica]
6 Hb_006198_140 0.2426434216 - - hypothetical protein L484_015208 [Morus notabilis]
7 Hb_000359_320 0.2446954327 transcription factor TF Family: HSF PREDICTED: heat stress transcription factor A-4a-like [Jatropha curcas]
8 Hb_001318_290 0.244860078 transcription factor TF Family: MYB r2r3-myb transcription factor, putative [Ricinus communis]
9 Hb_001227_020 0.2449568574 - - -
10 Hb_001862_170 0.2601814127 - - zinc finger protein, putative [Ricinus communis]
11 Hb_008948_060 0.2611177087 - - conserved hypothetical protein [Ricinus communis]
12 Hb_001558_070 0.2630528086 - - PREDICTED: mitochondrial uncoupling protein 5 [Jatropha curcas]
13 Hb_005203_010 0.2640456088 - - PREDICTED: probable nucleolar protein 5-1 [Jatropha curcas]
14 Hb_031862_090 0.2697602242 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RPM1-like [Jatropha curcas]
15 Hb_001454_360 0.2704093687 - - PREDICTED: bidirectional sugar transporter SWEET17 [Jatropha curcas]
16 Hb_002326_080 0.2731925603 transcription factor TF Family: C2C2-Dof PREDICTED: dof zinc finger protein DOF1.6 [Jatropha curcas]
17 Hb_001863_100 0.2738879414 - - conserved hypothetical protein [Ricinus communis]
18 Hb_027445_080 0.2753314799 transcription factor TF Family: LOB LOB domain protein 25 [Populus trichocarpa]
19 Hb_000165_190 0.2757106541 - - PREDICTED: U-box domain-containing protein 12-like [Jatropha curcas]
20 Hb_081448_010 0.2779439397 - - hypothetical protein JCGZ_11284 [Jatropha curcas]

Gene co-expression network

sample Hb_000813_150 Hb_000813_150 Hb_002067_130 Hb_002067_130 Hb_000813_150--Hb_002067_130 Hb_010883_220 Hb_010883_220 Hb_000813_150--Hb_010883_220 Hb_009252_120 Hb_009252_120 Hb_000813_150--Hb_009252_120 Hb_001703_110 Hb_001703_110 Hb_000813_150--Hb_001703_110 Hb_006198_140 Hb_006198_140 Hb_000813_150--Hb_006198_140 Hb_000359_320 Hb_000359_320 Hb_000813_150--Hb_000359_320 Hb_001318_290 Hb_001318_290 Hb_002067_130--Hb_001318_290 Hb_001862_170 Hb_001862_170 Hb_002067_130--Hb_001862_170 Hb_011099_010 Hb_011099_010 Hb_002067_130--Hb_011099_010 Hb_002067_130--Hb_001703_110 Hb_002918_130 Hb_002918_130 Hb_002067_130--Hb_002918_130 Hb_009543_040 Hb_009543_040 Hb_010883_220--Hb_009543_040 Hb_000751_210 Hb_000751_210 Hb_010883_220--Hb_000751_210 Hb_005203_010 Hb_005203_010 Hb_010883_220--Hb_005203_010 Hb_132438_010 Hb_132438_010 Hb_010883_220--Hb_132438_010 Hb_004218_230 Hb_004218_230 Hb_010883_220--Hb_004218_230 Hb_000575_010 Hb_000575_010 Hb_010883_220--Hb_000575_010 Hb_006816_160 Hb_006816_160 Hb_009252_120--Hb_006816_160 Hb_002820_120 Hb_002820_120 Hb_009252_120--Hb_002820_120 Hb_003910_020 Hb_003910_020 Hb_009252_120--Hb_003910_020 Hb_088117_010 Hb_088117_010 Hb_009252_120--Hb_088117_010 Hb_162047_010 Hb_162047_010 Hb_009252_120--Hb_162047_010 Hb_007101_290 Hb_007101_290 Hb_001703_110--Hb_007101_290 Hb_003960_020 Hb_003960_020 Hb_001703_110--Hb_003960_020 Hb_169492_020 Hb_169492_020 Hb_001703_110--Hb_169492_020 Hb_000772_060 Hb_000772_060 Hb_001703_110--Hb_000772_060 Hb_001703_110--Hb_002918_130 Hb_183209_010 Hb_183209_010 Hb_006198_140--Hb_183209_010 Hb_000935_070 Hb_000935_070 Hb_006198_140--Hb_000935_070 Hb_001227_020 Hb_001227_020 Hb_006198_140--Hb_001227_020 Hb_001558_070 Hb_001558_070 Hb_006198_140--Hb_001558_070 Hb_001021_140 Hb_001021_140 Hb_006198_140--Hb_001021_140 Hb_001863_100 Hb_001863_100 Hb_006198_140--Hb_001863_100 Hb_008948_060 Hb_008948_060 Hb_000359_320--Hb_008948_060 Hb_000359_320--Hb_001318_290 Hb_000359_320--Hb_001227_020 Hb_002236_070 Hb_002236_070 Hb_000359_320--Hb_002236_070 Hb_003938_010 Hb_003938_010 Hb_000359_320--Hb_003938_010 Hb_008695_130 Hb_008695_130 Hb_000359_320--Hb_008695_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.128845 0 0.0797783 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0421101 0 0.0678124 0

CAGE analysis