Hb_002067_130

Information

Type -
Description -
Location Contig2067: 99308-100075
Sequence    

Annotation

kegg
ID cit:102614777
description uncharacterized LOC102614777
nr
ID AAD22368.1
description putative non-LTR retroelement reverse transcriptase [Arabidopsis thaliana]
swissprot
ID P0C2F6
description Putative ribonuclease H protein At1g65750 OS=Arabidopsis thaliana GN=At1g65750 PE=3 SV=1
trembl
ID Q9SJZ8
description Putative non-LTR retroelement reverse transcriptase OS=Arabidopsis thaliana PE=4 SV=1
Gene Ontology
ID GO:0003676
description ribonuclease h protein at1g65750

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002067_130 0.0 - - putative non-LTR retroelement reverse transcriptase [Arabidopsis thaliana]
2 Hb_000813_150 0.2162209139 - - -
3 Hb_001318_290 0.2560966437 transcription factor TF Family: MYB r2r3-myb transcription factor, putative [Ricinus communis]
4 Hb_001862_170 0.2589292648 - - zinc finger protein, putative [Ricinus communis]
5 Hb_011099_010 0.2617457432 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
6 Hb_001703_110 0.2623900628 - - PREDICTED: putative ribonuclease H protein At1g65750 [Malus domestica]
7 Hb_002918_130 0.2839882961 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor 12 [Jatropha curcas]
8 Hb_010883_220 0.2902509555 - - PREDICTED: flavonol synthase/flavanone 3-hydroxylase-like [Prunus mume]
9 Hb_009736_010 0.2904463736 - - conserved hypothetical protein [Ricinus communis]
10 Hb_010921_040 0.2916215278 transcription factor TF Family: PLATZ PREDICTED: uncharacterized protein LOC105634154 [Jatropha curcas]
11 Hb_001493_170 0.2917714172 - - PREDICTED: uncharacterized protein LOC105631328 [Jatropha curcas]
12 Hb_169492_020 0.2923046496 - - hypothetical protein JCGZ_11849 [Jatropha curcas]
13 Hb_060272_010 0.2946085269 - - PREDICTED: gibberellin 20 oxidase 2 [Populus euphratica]
14 Hb_086122_030 0.2949300019 - - D-glycerate 3-kinase, chloroplast precursor, putative [Ricinus communis]
15 Hb_161981_010 0.2958798276 - - brassinosteroid insensitive 1 -like protein [Gossypium arboreum]
16 Hb_004724_450 0.2969457933 - - PREDICTED: uncharacterized protein LOC105647069 isoform X1 [Jatropha curcas]
17 Hb_017866_010 0.2970941566 - - kinase family protein [Populus trichocarpa]
18 Hb_001157_130 0.2996770079 - - PREDICTED: transmembrane protein 45B-like [Jatropha curcas]
19 Hb_000521_350 0.2998546876 - - unnamed protein product [Vitis vinifera]
20 Hb_112011_010 0.3005291618 - - PREDICTED: TMV resistance protein N-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_002067_130 Hb_002067_130 Hb_000813_150 Hb_000813_150 Hb_002067_130--Hb_000813_150 Hb_001318_290 Hb_001318_290 Hb_002067_130--Hb_001318_290 Hb_001862_170 Hb_001862_170 Hb_002067_130--Hb_001862_170 Hb_011099_010 Hb_011099_010 Hb_002067_130--Hb_011099_010 Hb_001703_110 Hb_001703_110 Hb_002067_130--Hb_001703_110 Hb_002918_130 Hb_002918_130 Hb_002067_130--Hb_002918_130 Hb_010883_220 Hb_010883_220 Hb_000813_150--Hb_010883_220 Hb_009252_120 Hb_009252_120 Hb_000813_150--Hb_009252_120 Hb_000813_150--Hb_001703_110 Hb_006198_140 Hb_006198_140 Hb_000813_150--Hb_006198_140 Hb_000359_320 Hb_000359_320 Hb_000813_150--Hb_000359_320 Hb_001227_020 Hb_001227_020 Hb_001318_290--Hb_001227_020 Hb_001318_290--Hb_000359_320 Hb_001558_070 Hb_001558_070 Hb_001318_290--Hb_001558_070 Hb_008948_060 Hb_008948_060 Hb_001318_290--Hb_008948_060 Hb_001318_290--Hb_001862_170 Hb_009736_010 Hb_009736_010 Hb_001318_290--Hb_009736_010 Hb_001862_170--Hb_001558_070 Hb_073171_010 Hb_073171_010 Hb_001862_170--Hb_073171_010 Hb_001862_170--Hb_008948_060 Hb_001006_030 Hb_001006_030 Hb_001862_170--Hb_001006_030 Hb_001493_170 Hb_001493_170 Hb_001862_170--Hb_001493_170 Hb_002461_070 Hb_002461_070 Hb_001862_170--Hb_002461_070 Hb_005965_020 Hb_005965_020 Hb_011099_010--Hb_005965_020 Hb_002936_020 Hb_002936_020 Hb_011099_010--Hb_002936_020 Hb_001754_160 Hb_001754_160 Hb_011099_010--Hb_001754_160 Hb_003266_070 Hb_003266_070 Hb_011099_010--Hb_003266_070 Hb_000031_330 Hb_000031_330 Hb_011099_010--Hb_000031_330 Hb_002289_140 Hb_002289_140 Hb_011099_010--Hb_002289_140 Hb_007101_290 Hb_007101_290 Hb_001703_110--Hb_007101_290 Hb_003960_020 Hb_003960_020 Hb_001703_110--Hb_003960_020 Hb_169492_020 Hb_169492_020 Hb_001703_110--Hb_169492_020 Hb_000772_060 Hb_000772_060 Hb_001703_110--Hb_000772_060 Hb_001703_110--Hb_002918_130 Hb_000112_100 Hb_000112_100 Hb_002918_130--Hb_000112_100 Hb_007849_010 Hb_007849_010 Hb_002918_130--Hb_007849_010 Hb_020178_010 Hb_020178_010 Hb_002918_130--Hb_020178_010 Hb_006503_010 Hb_006503_010 Hb_002918_130--Hb_006503_010 Hb_002918_130--Hb_009736_010 Hb_002918_130--Hb_007101_290
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.146377 0 0.321047 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.129107 0 0.217567 0

CAGE analysis