Hb_002936_020

Information

Type -
Description -
Location Contig2936: 21939-22962
Sequence    

Annotation

kegg
ID mus:103981279
description uncharacterized protein LOC103981279
nr
ID CAN64590.1
description hypothetical protein VITISV_001748 [Vitis vinifera]
swissprot
ID -
description -
trembl
ID A5AIT8
description Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_001748 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002936_020 0.0 - - hypothetical protein VITISV_001748 [Vitis vinifera]
2 Hb_004319_100 0.1768082656 - - PREDICTED: gibberellin-regulated protein 14 isoform X3 [Jatropha curcas]
3 Hb_002894_070 0.1792773621 - - PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein B [Jatropha curcas]
4 Hb_000616_100 0.1794043191 - - Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]
5 Hb_159012_010 0.1803486253 - - PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase At5g06940 [Jatropha curcas]
6 Hb_000194_030 0.1859061878 transcription factor TF Family: NAC NAC transcription factor 059 [Jatropha curcas]
7 Hb_001529_010 0.1897315759 - - -
8 Hb_000313_280 0.1898216365 - - hypothetical protein PRUPE_ppa014856mg, partial [Prunus persica]
9 Hb_060236_010 0.1911849171 - - hypothetical protein JCGZ_26099 [Jatropha curcas]
10 Hb_002122_060 0.1922802952 - - PREDICTED: putative disease resistance protein RGA4 [Beta vulgaris subsp. vulgaris]
11 Hb_000007_070 0.1926612559 - - hypothetical protein POPTR_0008s11290g [Populus trichocarpa]
12 Hb_082733_010 0.1951025033 - - hypothetical protein JCGZ_23600 [Jatropha curcas]
13 Hb_059226_020 0.1988070538 - - hypothetical protein B456_008G287700 [Gossypium raimondii]
14 Hb_004926_010 0.1992859234 - - hypothetical protein JCGZ_27059 [Jatropha curcas]
15 Hb_033772_040 0.1998525989 - - conserved hypothetical protein [Ricinus communis]
16 Hb_039946_040 0.2030424774 - - PREDICTED: sugar transport protein 14-like [Jatropha curcas]
17 Hb_066207_020 0.2059436512 - - hypothetical protein JCGZ_22048 [Jatropha curcas]
18 Hb_005672_030 0.2077336279 - - PREDICTED: high mobility group B protein 3-like [Jatropha curcas]
19 Hb_002054_090 0.208775593 - - PREDICTED: 36.4 kDa proline-rich protein-like [Gossypium raimondii]
20 Hb_001195_210 0.2091411944 - - -

Gene co-expression network

sample Hb_002936_020 Hb_002936_020 Hb_004319_100 Hb_004319_100 Hb_002936_020--Hb_004319_100 Hb_002894_070 Hb_002894_070 Hb_002936_020--Hb_002894_070 Hb_000616_100 Hb_000616_100 Hb_002936_020--Hb_000616_100 Hb_159012_010 Hb_159012_010 Hb_002936_020--Hb_159012_010 Hb_000194_030 Hb_000194_030 Hb_002936_020--Hb_000194_030 Hb_001529_010 Hb_001529_010 Hb_002936_020--Hb_001529_010 Hb_004319_100--Hb_000194_030 Hb_033772_040 Hb_033772_040 Hb_004319_100--Hb_033772_040 Hb_007426_100 Hb_007426_100 Hb_004319_100--Hb_007426_100 Hb_004319_100--Hb_001529_010 Hb_034310_020 Hb_034310_020 Hb_004319_100--Hb_034310_020 Hb_004319_100--Hb_159012_010 Hb_000313_280 Hb_000313_280 Hb_002894_070--Hb_000313_280 Hb_000740_080 Hb_000740_080 Hb_002894_070--Hb_000740_080 Hb_002894_070--Hb_000616_100 Hb_019299_020 Hb_019299_020 Hb_002894_070--Hb_019299_020 Hb_000563_140 Hb_000563_140 Hb_002894_070--Hb_000563_140 Hb_020831_060 Hb_020831_060 Hb_002894_070--Hb_020831_060 Hb_000149_020 Hb_000149_020 Hb_000616_100--Hb_000149_020 Hb_002122_060 Hb_002122_060 Hb_000616_100--Hb_002122_060 Hb_000373_260 Hb_000373_260 Hb_000616_100--Hb_000373_260 Hb_000616_100--Hb_000740_080 Hb_003582_010 Hb_003582_010 Hb_000616_100--Hb_003582_010 Hb_159012_010--Hb_000194_030 Hb_004926_010 Hb_004926_010 Hb_159012_010--Hb_004926_010 Hb_000480_050 Hb_000480_050 Hb_159012_010--Hb_000480_050 Hb_159012_010--Hb_001529_010 Hb_007477_020 Hb_007477_020 Hb_159012_010--Hb_007477_020 Hb_000194_030--Hb_004926_010 Hb_000194_030--Hb_007426_100 Hb_000194_030--Hb_001529_010 Hb_000194_030--Hb_000480_050 Hb_033153_030 Hb_033153_030 Hb_001529_010--Hb_033153_030 Hb_000445_480 Hb_000445_480 Hb_001529_010--Hb_000445_480 Hb_001529_010--Hb_007426_100 Hb_002894_020 Hb_002894_020 Hb_001529_010--Hb_002894_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.701757 0.749663 7.5577 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.484281 0 1.59024 0

CAGE analysis