Hb_000616_100

Information

Type -
Description -
Location Contig616: 116224-119613
Sequence    

Annotation

kegg
ID rcu:RCOM_0339150
description Receptor protein kinase CLAVATA1 precursor, putative (EC:2.7.11.25 1.3.1.74)
nr
ID XP_002531997.1
description Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]
swissprot
ID C0LGX3
description LRR receptor-like serine/threonine-protein kinase HSL2 OS=Arabidopsis thaliana GN=HSL2 PE=2 SV=1
trembl
ID B9T171
description Receptor protein kinase CLAVATA1, putative OS=Ricinus communis GN=RCOM_0339150 PE=3 SV=1
Gene Ontology
ID GO:0005622
description lrr receptor-like serine threonine-protein kinase hsl2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000616_100 0.0 - - Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]
2 Hb_000149_020 0.126640403 - - Proline-rich receptor-like protein kinase PERK14 [Glycine soja]
3 Hb_002122_060 0.1299344875 - - PREDICTED: putative disease resistance protein RGA4 [Beta vulgaris subsp. vulgaris]
4 Hb_002894_070 0.1341897767 - - PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein B [Jatropha curcas]
5 Hb_000373_260 0.1390365407 - - hypothetical protein POPTR_0002s06820g [Populus trichocarpa]
6 Hb_000740_080 0.145180237 - - -
7 Hb_003582_010 0.1472085414 - - hypothetical protein EUGRSUZ_B026451, partial [Eucalyptus grandis]
8 Hb_001013_060 0.1492475711 - - -
9 Hb_016120_020 0.1517155064 - - PREDICTED: tetrahydrocannabinolic acid synthase-like [Jatropha curcas]
10 Hb_000032_340 0.1524645567 - - PREDICTED: uncharacterized protein LOC105645669 [Jatropha curcas]
11 Hb_000313_280 0.1525673193 - - hypothetical protein PRUPE_ppa014856mg, partial [Prunus persica]
12 Hb_006026_020 0.1528553719 - - PREDICTED: BTB/POZ domain-containing protein At5g48800 [Jatropha curcas]
13 Hb_000203_150 0.1548630293 - - PREDICTED: uncharacterized protein LOC105116038 [Populus euphratica]
14 Hb_000897_010 0.1577367777 - - hypothetical protein JCGZ_13196 [Jatropha curcas]
15 Hb_000720_060 0.1604520072 - - PREDICTED: BON1-associated protein 2-like [Jatropha curcas]
16 Hb_001775_060 0.1629266443 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000015_140 0.1629606247 - - PREDICTED: CASP-like protein 4C1 [Vitis vinifera]
18 Hb_002897_030 0.1636566927 - - PREDICTED: methylesterase 17 [Jatropha curcas]
19 Hb_000860_030 0.1651855822 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000856_250 0.1654299135 - - short chain alcohol dehydrogenase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000616_100 Hb_000616_100 Hb_000149_020 Hb_000149_020 Hb_000616_100--Hb_000149_020 Hb_002122_060 Hb_002122_060 Hb_000616_100--Hb_002122_060 Hb_002894_070 Hb_002894_070 Hb_000616_100--Hb_002894_070 Hb_000373_260 Hb_000373_260 Hb_000616_100--Hb_000373_260 Hb_000740_080 Hb_000740_080 Hb_000616_100--Hb_000740_080 Hb_003582_010 Hb_003582_010 Hb_000616_100--Hb_003582_010 Hb_120040_010 Hb_120040_010 Hb_000149_020--Hb_120040_010 Hb_000149_020--Hb_000740_080 Hb_006026_020 Hb_006026_020 Hb_000149_020--Hb_006026_020 Hb_011355_020 Hb_011355_020 Hb_000149_020--Hb_011355_020 Hb_000897_010 Hb_000897_010 Hb_000149_020--Hb_000897_010 Hb_002897_030 Hb_002897_030 Hb_000149_020--Hb_002897_030 Hb_000313_280 Hb_000313_280 Hb_002122_060--Hb_000313_280 Hb_000015_140 Hb_000015_140 Hb_002122_060--Hb_000015_140 Hb_002122_060--Hb_002894_070 Hb_008536_030 Hb_008536_030 Hb_002122_060--Hb_008536_030 Hb_002054_090 Hb_002054_090 Hb_002122_060--Hb_002054_090 Hb_002894_070--Hb_000313_280 Hb_002894_070--Hb_000740_080 Hb_019299_020 Hb_019299_020 Hb_002894_070--Hb_019299_020 Hb_000563_140 Hb_000563_140 Hb_002894_070--Hb_000563_140 Hb_020831_060 Hb_020831_060 Hb_002894_070--Hb_020831_060 Hb_005214_050 Hb_005214_050 Hb_000373_260--Hb_005214_050 Hb_000373_260--Hb_011355_020 Hb_000373_260--Hb_006026_020 Hb_004970_100 Hb_004970_100 Hb_000373_260--Hb_004970_100 Hb_004031_050 Hb_004031_050 Hb_000373_260--Hb_004031_050 Hb_000373_260--Hb_000149_020 Hb_000740_080--Hb_019299_020 Hb_000740_080--Hb_000897_010 Hb_002768_040 Hb_002768_040 Hb_000740_080--Hb_002768_040 Hb_000740_080--Hb_004970_100 Hb_000352_360 Hb_000352_360 Hb_000740_080--Hb_000352_360 Hb_008385_010 Hb_008385_010 Hb_003582_010--Hb_008385_010 Hb_001013_070 Hb_001013_070 Hb_003582_010--Hb_001013_070 Hb_002511_050 Hb_002511_050 Hb_003582_010--Hb_002511_050 Hb_000705_070 Hb_000705_070 Hb_003582_010--Hb_000705_070 Hb_001322_010 Hb_001322_010 Hb_003582_010--Hb_001322_010 Hb_001013_060 Hb_001013_060 Hb_003582_010--Hb_001013_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0175352 0.694746 0.323422 2.87257 0.00584976 0.00538799
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0521338 0 0.591099 0.0668393

CAGE analysis