Hb_169492_020

Information

Type -
Description -
Location Contig169492: 13114-15758
Sequence    

Annotation

kegg
ID pop:POPTR_0003s08540g
description hypothetical protein
nr
ID KDP45946.1
description hypothetical protein JCGZ_11849 [Jatropha curcas]
swissprot
ID Q9SJG6
description Pentatricopeptide repeat-containing protein At2g42920, chloroplastic OS=Arabidopsis thaliana GN=PCMP-E75 PE=2 SV=1
trembl
ID A0A067LBT6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11849 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_169492_020 0.0 - - hypothetical protein JCGZ_11849 [Jatropha curcas]
2 Hb_001703_110 0.252126848 - - PREDICTED: putative ribonuclease H protein At1g65750 [Malus domestica]
3 Hb_002067_130 0.2923046496 - - putative non-LTR retroelement reverse transcriptase [Arabidopsis thaliana]
4 Hb_001318_290 0.2977093292 transcription factor TF Family: MYB r2r3-myb transcription factor, putative [Ricinus communis]
5 Hb_000813_150 0.2985054142 - - -
6 Hb_002918_130 0.300093159 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor 12 [Jatropha curcas]
7 Hb_009545_020 0.3008645891 - - PREDICTED: uncharacterized protein LOC105632008 [Jatropha curcas]
8 Hb_007101_290 0.3016039398 transcription factor TF Family: C2H2 conserved hypothetical protein [Ricinus communis]
9 Hb_009736_010 0.3137787623 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000772_060 0.3171969859 - - conserved hypothetical protein [Ricinus communis]
11 Hb_031527_060 0.3222776825 - - glutamate decarboxylase, putative [Ricinus communis]
12 Hb_070277_010 0.3343656558 - - PREDICTED: purine permease 3-like [Jatropha curcas]
13 Hb_010883_220 0.3423859841 - - PREDICTED: flavonol synthase/flavanone 3-hydroxylase-like [Prunus mume]
14 Hb_083493_020 0.3448115233 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein At4g27190-like [Vitis vinifera]
15 Hb_000032_580 0.3494766006 - - hypothetical protein RCOM_1311780 [Ricinus communis]
16 Hb_001170_010 0.3495086575 transcription factor TF Family: NAC transcription factor, putative [Ricinus communis]
17 Hb_001103_040 0.3524811539 - - hypothetical protein POPTR_0013s11170g [Populus trichocarpa]
18 Hb_000189_490 0.3530899971 - - Sulfate/thiosulfate import ATP-binding protein cysA [Theobroma cacao]
19 Hb_000787_040 0.3536692325 - - PREDICTED: uncharacterized protein LOC105115900 isoform X1 [Populus euphratica]
20 Hb_001439_110 0.3541577861 transcription factor TF Family: ERF PREDICTED: uncharacterized protein LOC105133481 [Populus euphratica]

Gene co-expression network

sample Hb_169492_020 Hb_169492_020 Hb_001703_110 Hb_001703_110 Hb_169492_020--Hb_001703_110 Hb_002067_130 Hb_002067_130 Hb_169492_020--Hb_002067_130 Hb_001318_290 Hb_001318_290 Hb_169492_020--Hb_001318_290 Hb_000813_150 Hb_000813_150 Hb_169492_020--Hb_000813_150 Hb_002918_130 Hb_002918_130 Hb_169492_020--Hb_002918_130 Hb_009545_020 Hb_009545_020 Hb_169492_020--Hb_009545_020 Hb_007101_290 Hb_007101_290 Hb_001703_110--Hb_007101_290 Hb_001703_110--Hb_000813_150 Hb_003960_020 Hb_003960_020 Hb_001703_110--Hb_003960_020 Hb_000772_060 Hb_000772_060 Hb_001703_110--Hb_000772_060 Hb_001703_110--Hb_002918_130 Hb_002067_130--Hb_000813_150 Hb_002067_130--Hb_001318_290 Hb_001862_170 Hb_001862_170 Hb_002067_130--Hb_001862_170 Hb_011099_010 Hb_011099_010 Hb_002067_130--Hb_011099_010 Hb_002067_130--Hb_001703_110 Hb_002067_130--Hb_002918_130 Hb_001227_020 Hb_001227_020 Hb_001318_290--Hb_001227_020 Hb_000359_320 Hb_000359_320 Hb_001318_290--Hb_000359_320 Hb_001558_070 Hb_001558_070 Hb_001318_290--Hb_001558_070 Hb_008948_060 Hb_008948_060 Hb_001318_290--Hb_008948_060 Hb_001318_290--Hb_001862_170 Hb_009736_010 Hb_009736_010 Hb_001318_290--Hb_009736_010 Hb_010883_220 Hb_010883_220 Hb_000813_150--Hb_010883_220 Hb_009252_120 Hb_009252_120 Hb_000813_150--Hb_009252_120 Hb_006198_140 Hb_006198_140 Hb_000813_150--Hb_006198_140 Hb_000813_150--Hb_000359_320 Hb_000112_100 Hb_000112_100 Hb_002918_130--Hb_000112_100 Hb_007849_010 Hb_007849_010 Hb_002918_130--Hb_007849_010 Hb_020178_010 Hb_020178_010 Hb_002918_130--Hb_020178_010 Hb_006503_010 Hb_006503_010 Hb_002918_130--Hb_006503_010 Hb_002918_130--Hb_009736_010 Hb_002918_130--Hb_007101_290 Hb_031527_060 Hb_031527_060 Hb_009545_020--Hb_031527_060 Hb_009545_020--Hb_009736_010 Hb_003120_040 Hb_003120_040 Hb_009545_020--Hb_003120_040 Hb_124315_030 Hb_124315_030 Hb_009545_020--Hb_124315_030 Hb_000853_060 Hb_000853_060 Hb_009545_020--Hb_000853_060 Hb_004965_060 Hb_004965_060 Hb_009545_020--Hb_004965_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0210654 0.04222 0 0.0359257 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0379217 0 0.0609425 0

CAGE analysis