Hb_000112_100

Information

Type -
Description -
Location Contig112: 254459-259932
Sequence    

Annotation

kegg
ID rcu:RCOM_1452030
description glutamate receptor 2 plant, putative
nr
ID XP_002513033.1
description glutamate receptor 2 plant, putative [Ricinus communis]
swissprot
ID Q8LGN0
description Glutamate receptor 2.7 OS=Arabidopsis thaliana GN=GLR2.7 PE=2 SV=3
trembl
ID B9RG81
description Glutamate receptor 2 plant, putative OS=Ricinus communis GN=RCOM_1452030 PE=4 SV=1
Gene Ontology
ID GO:0016021
description glutamate receptor 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000112_100 0.0 - - glutamate receptor 2 plant, putative [Ricinus communis]
2 Hb_020178_010 0.139821847 transcription factor TF Family: MYB-related PREDICTED: myb-related protein A-like [Jatropha curcas]
3 Hb_000953_080 0.2029413972 - - PREDICTED: PAN domain-containing protein At5g03700 [Jatropha curcas]
4 Hb_002918_130 0.209562647 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor 12 [Jatropha curcas]
5 Hb_005946_120 0.2320256213 - - peptidase, putative [Ricinus communis]
6 Hb_000031_330 0.240999458 transcription factor TF Family: Orphans hypothetical protein POPTR_0157s00200g, partial [Populus trichocarpa]
7 Hb_000007_430 0.2545514423 - - hypothetical protein POPTR_0010s14280g [Populus trichocarpa]
8 Hb_007849_010 0.2546909338 transcription factor TF Family: MYB PREDICTED: myb-related protein Myb4-like [Populus euphratica]
9 Hb_000836_230 0.2643773371 - - Uncharacterized protein TCM_041879 [Theobroma cacao]
10 Hb_160246_010 0.2672915841 - - calcium ion binding protein, putative [Ricinus communis]
11 Hb_011099_010 0.2707943837 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
12 Hb_034904_010 0.2728700859 - - PREDICTED: uncharacterized protein LOC105775231 [Gossypium raimondii]
13 Hb_003643_030 0.280139962 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RGA2-like [Populus euphratica]
14 Hb_010598_010 0.285985059 - - PREDICTED: ankyrin-1-like [Jatropha curcas]
15 Hb_009775_040 0.2862662826 - - PREDICTED: probable glutathione S-transferase parC [Vitis vinifera]
16 Hb_000567_180 0.2922959123 transcription factor TF Family: C2C2-Dof PREDICTED: dof zinc finger protein DOF1.5 [Jatropha curcas]
17 Hb_003266_070 0.2934734609 - - -
18 Hb_000086_720 0.2960465653 - - leucoanthocyanidin dioxygenase, putative [Ricinus communis]
19 Hb_002338_030 0.2963898712 - - PREDICTED: 60S acidic ribosomal protein P1-like [Tarenaya hassleriana]
20 Hb_001195_210 0.2992093856 - - -

Gene co-expression network

sample Hb_000112_100 Hb_000112_100 Hb_020178_010 Hb_020178_010 Hb_000112_100--Hb_020178_010 Hb_000953_080 Hb_000953_080 Hb_000112_100--Hb_000953_080 Hb_002918_130 Hb_002918_130 Hb_000112_100--Hb_002918_130 Hb_005946_120 Hb_005946_120 Hb_000112_100--Hb_005946_120 Hb_000031_330 Hb_000031_330 Hb_000112_100--Hb_000031_330 Hb_000007_430 Hb_000007_430 Hb_000112_100--Hb_000007_430 Hb_001832_050 Hb_001832_050 Hb_020178_010--Hb_001832_050 Hb_020178_010--Hb_002918_130 Hb_000836_230 Hb_000836_230 Hb_020178_010--Hb_000836_230 Hb_007849_010 Hb_007849_010 Hb_020178_010--Hb_007849_010 Hb_009775_040 Hb_009775_040 Hb_020178_010--Hb_009775_040 Hb_000953_080--Hb_000031_330 Hb_001456_050 Hb_001456_050 Hb_000953_080--Hb_001456_050 Hb_055147_020 Hb_055147_020 Hb_000953_080--Hb_055147_020 Hb_010598_010 Hb_010598_010 Hb_000953_080--Hb_010598_010 Hb_001195_210 Hb_001195_210 Hb_000953_080--Hb_001195_210 Hb_002918_130--Hb_007849_010 Hb_006503_010 Hb_006503_010 Hb_002918_130--Hb_006503_010 Hb_009736_010 Hb_009736_010 Hb_002918_130--Hb_009736_010 Hb_007101_290 Hb_007101_290 Hb_002918_130--Hb_007101_290 Hb_004945_020 Hb_004945_020 Hb_005946_120--Hb_004945_020 Hb_001214_150 Hb_001214_150 Hb_005946_120--Hb_001214_150 Hb_005946_120--Hb_020178_010 Hb_005946_120--Hb_000031_330 Hb_005946_120--Hb_000953_080 Hb_007382_090 Hb_007382_090 Hb_000031_330--Hb_007382_090 Hb_000031_330--Hb_001195_210 Hb_005217_070 Hb_005217_070 Hb_000031_330--Hb_005217_070 Hb_003740_030 Hb_003740_030 Hb_000031_330--Hb_003740_030 Hb_000116_200 Hb_000116_200 Hb_000031_330--Hb_000116_200 Hb_019863_030 Hb_019863_030 Hb_000007_430--Hb_019863_030 Hb_000005_340 Hb_000005_340 Hb_000007_430--Hb_000005_340 Hb_000984_260 Hb_000984_260 Hb_000007_430--Hb_000984_260 Hb_000175_470 Hb_000175_470 Hb_000007_430--Hb_000175_470 Hb_001922_060 Hb_001922_060 Hb_000007_430--Hb_001922_060 Hb_172706_020 Hb_172706_020 Hb_000007_430--Hb_172706_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.00621635 0.0144518 0.0137189 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0112194 0 0.017798 0

CAGE analysis