Hb_000116_200

Information

Type transcription factor
Description TF Family: HMG
Location Contig116: 174944-175669
Sequence    

Annotation

kegg
ID pop:POPTR_0005s10440g
description hypothetical protein
nr
ID XP_002306429.1
description hypothetical protein POPTR_0005s10440g [Populus trichocarpa]
swissprot
ID P40619
description HMG1/2-like protein OS=Ipomoea nil PE=2 SV=1
trembl
ID B9H672
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s10440g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04832: 175560-175816
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000116_200 0.0 transcription factor TF Family: HMG hypothetical protein POPTR_0005s10440g [Populus trichocarpa]
2 Hb_001195_210 0.1930291979 - - -
3 Hb_003376_370 0.2123821279 - - protein binding protein, putative [Ricinus communis]
4 Hb_154600_010 0.2183501796 - - hypothetical protein JCGZ_17786 [Jatropha curcas]
5 Hb_001754_160 0.2279728083 - - PREDICTED: flowering-promoting factor 1-like protein 3 [Jatropha curcas]
6 Hb_000031_330 0.2282925662 transcription factor TF Family: Orphans hypothetical protein POPTR_0157s00200g, partial [Populus trichocarpa]
7 Hb_003643_030 0.235797966 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RGA2-like [Populus euphratica]
8 Hb_002289_140 0.2498881534 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000552_060 0.2505438843 - - PREDICTED: theobromine synthase 2-like isoform X3 [Jatropha curcas]
10 Hb_011099_010 0.2567232796 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
11 Hb_000896_070 0.257210983 - - ammonium transporter, putative [Ricinus communis]
12 Hb_000302_350 0.2596183788 - - polygalacturonase, putative [Ricinus communis]
13 Hb_002936_020 0.2646873346 - - hypothetical protein VITISV_001748 [Vitis vinifera]
14 Hb_000953_080 0.2730447177 - - PREDICTED: PAN domain-containing protein At5g03700 [Jatropha curcas]
15 Hb_005144_170 0.2733824568 - - PREDICTED: shugoshin-1-like isoform X2 [Jatropha curcas]
16 Hb_005916_040 0.2733876725 - - PREDICTED: auxin transporter-like protein 5 [Populus euphratica]
17 Hb_002602_030 0.2745531809 - - PREDICTED: chaperone protein dnaJ 11, chloroplastic [Jatropha curcas]
18 Hb_000157_020 0.2766338215 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000934_150 0.2795417809 - - hypothetical protein POPTR_0005s21000g [Populus trichocarpa]
20 Hb_002601_040 0.2797175778 - - hypothetical protein JCGZ_06197 [Jatropha curcas]

Gene co-expression network

sample Hb_000116_200 Hb_000116_200 Hb_001195_210 Hb_001195_210 Hb_000116_200--Hb_001195_210 Hb_003376_370 Hb_003376_370 Hb_000116_200--Hb_003376_370 Hb_154600_010 Hb_154600_010 Hb_000116_200--Hb_154600_010 Hb_001754_160 Hb_001754_160 Hb_000116_200--Hb_001754_160 Hb_000031_330 Hb_000031_330 Hb_000116_200--Hb_000031_330 Hb_003643_030 Hb_003643_030 Hb_000116_200--Hb_003643_030 Hb_005672_030 Hb_005672_030 Hb_001195_210--Hb_005672_030 Hb_015934_100 Hb_015934_100 Hb_001195_210--Hb_015934_100 Hb_000853_010 Hb_000853_010 Hb_001195_210--Hb_000853_010 Hb_000007_070 Hb_000007_070 Hb_001195_210--Hb_000007_070 Hb_146901_020 Hb_146901_020 Hb_001195_210--Hb_146901_020 Hb_001416_170 Hb_001416_170 Hb_001195_210--Hb_001416_170 Hb_001205_290 Hb_001205_290 Hb_003376_370--Hb_001205_290 Hb_000270_050 Hb_000270_050 Hb_003376_370--Hb_000270_050 Hb_005916_040 Hb_005916_040 Hb_003376_370--Hb_005916_040 Hb_012016_050 Hb_012016_050 Hb_003376_370--Hb_012016_050 Hb_007617_040 Hb_007617_040 Hb_003376_370--Hb_007617_040 Hb_004884_170 Hb_004884_170 Hb_003376_370--Hb_004884_170 Hb_005965_020 Hb_005965_020 Hb_154600_010--Hb_005965_020 Hb_154600_010--Hb_003376_370 Hb_154600_010--Hb_000031_330 Hb_025048_020 Hb_025048_020 Hb_154600_010--Hb_025048_020 Hb_004774_030 Hb_004774_030 Hb_154600_010--Hb_004774_030 Hb_001754_160--Hb_003643_030 Hb_000896_070 Hb_000896_070 Hb_001754_160--Hb_000896_070 Hb_003266_070 Hb_003266_070 Hb_001754_160--Hb_003266_070 Hb_011099_010 Hb_011099_010 Hb_001754_160--Hb_011099_010 Hb_001754_160--Hb_001195_210 Hb_007382_090 Hb_007382_090 Hb_000031_330--Hb_007382_090 Hb_000031_330--Hb_001195_210 Hb_000953_080 Hb_000953_080 Hb_000031_330--Hb_000953_080 Hb_005217_070 Hb_005217_070 Hb_000031_330--Hb_005217_070 Hb_003740_030 Hb_003740_030 Hb_000031_330--Hb_003740_030 Hb_003643_030--Hb_003266_070 Hb_003643_030--Hb_001195_210 Hb_001143_150 Hb_001143_150 Hb_003643_030--Hb_001143_150 Hb_160246_010 Hb_160246_010 Hb_003643_030--Hb_160246_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.317863 0.182442 1.23692 3.14598 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.594704 0 0.966502 0

CAGE analysis