Hb_012016_050

Information

Type -
Description -
Location Contig12016: 57694-57939
Sequence    

Annotation

kegg
ID rcu:RCOM_1202380
description hypothetical protein
nr
ID KDP35598.1
description hypothetical protein JCGZ_09036 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KKR8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09036 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06253: 57901-58222
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012016_050 0.0 - - hypothetical protein JCGZ_09036 [Jatropha curcas]
2 Hb_128392_010 0.118466947 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein At3g19184 isoform X1 [Jatropha curcas]
3 Hb_005701_100 0.128002177 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180 [Jatropha curcas]
4 Hb_000039_080 0.1288643349 - - cyclin d, putative [Ricinus communis]
5 Hb_000700_020 0.1368352139 - - PREDICTED: probable pectate lyase 8 [Jatropha curcas]
6 Hb_001205_290 0.1414425793 transcription factor TF Family: OFP PREDICTED: transcription repressor OFP7-like [Jatropha curcas]
7 Hb_001247_060 0.1418961501 - - zinc finger protein, putative [Ricinus communis]
8 Hb_012092_040 0.1439109235 - - PREDICTED: expansin-A1 isoform X1 [Jatropha curcas]
9 Hb_003464_010 0.1461279361 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000270_050 0.146718827 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase FEI 2 [Jatropha curcas]
11 Hb_000289_020 0.1486792431 - - hypothetical protein CICLE_v10009323mg [Citrus clementina]
12 Hb_001152_040 0.150827594 - - peripheral-type benzodiazepine receptor, putative [Ricinus communis]
13 Hb_000089_090 0.1546487403 - - hypothetical protein POPTR_0019s12670g [Populus trichocarpa]
14 Hb_087717_010 0.1559084961 - - hypothetical protein JCGZ_01246 [Jatropha curcas]
15 Hb_000009_100 0.1565408997 transcription factor TF Family: HB hypothetical protein JCGZ_12260 [Jatropha curcas]
16 Hb_036602_010 0.159537954 - - PREDICTED: wall-associated receptor kinase 2-like [Jatropha curcas]
17 Hb_003489_010 0.1611720831 - - PREDICTED: metalloendoproteinase 1-like [Populus euphratica]
18 Hb_000483_120 0.1621346683 transcription factor TF Family: MYB hypothetical protein POPTR_0004s12530g [Populus trichocarpa]
19 Hb_064194_010 0.1621357626 - - PREDICTED: endoglucanase 6 [Jatropha curcas]
20 Hb_132880_020 0.1623416485 - - hypothetical protein VITISV_026364 [Vitis vinifera]

Gene co-expression network

sample Hb_012016_050 Hb_012016_050 Hb_128392_010 Hb_128392_010 Hb_012016_050--Hb_128392_010 Hb_005701_100 Hb_005701_100 Hb_012016_050--Hb_005701_100 Hb_000039_080 Hb_000039_080 Hb_012016_050--Hb_000039_080 Hb_000700_020 Hb_000700_020 Hb_012016_050--Hb_000700_020 Hb_001205_290 Hb_001205_290 Hb_012016_050--Hb_001205_290 Hb_001247_060 Hb_001247_060 Hb_012016_050--Hb_001247_060 Hb_021576_050 Hb_021576_050 Hb_128392_010--Hb_021576_050 Hb_000527_020 Hb_000527_020 Hb_128392_010--Hb_000527_020 Hb_000035_230 Hb_000035_230 Hb_128392_010--Hb_000035_230 Hb_003847_060 Hb_003847_060 Hb_128392_010--Hb_003847_060 Hb_005398_050 Hb_005398_050 Hb_128392_010--Hb_005398_050 Hb_003464_010 Hb_003464_010 Hb_128392_010--Hb_003464_010 Hb_036602_010 Hb_036602_010 Hb_005701_100--Hb_036602_010 Hb_008215_020 Hb_008215_020 Hb_005701_100--Hb_008215_020 Hb_014549_010 Hb_014549_010 Hb_005701_100--Hb_014549_010 Hb_012092_040 Hb_012092_040 Hb_005701_100--Hb_012092_040 Hb_025163_020 Hb_025163_020 Hb_005701_100--Hb_025163_020 Hb_177195_010 Hb_177195_010 Hb_005701_100--Hb_177195_010 Hb_000483_120 Hb_000483_120 Hb_000039_080--Hb_000483_120 Hb_179367_020 Hb_179367_020 Hb_000039_080--Hb_179367_020 Hb_000908_030 Hb_000908_030 Hb_000039_080--Hb_000908_030 Hb_177179_020 Hb_177179_020 Hb_000039_080--Hb_177179_020 Hb_011826_010 Hb_011826_010 Hb_000039_080--Hb_011826_010 Hb_120289_010 Hb_120289_010 Hb_000700_020--Hb_120289_010 Hb_064194_010 Hb_064194_010 Hb_000700_020--Hb_064194_010 Hb_000056_290 Hb_000056_290 Hb_000700_020--Hb_000056_290 Hb_109304_010 Hb_109304_010 Hb_000700_020--Hb_109304_010 Hb_000162_160 Hb_000162_160 Hb_000700_020--Hb_000162_160 Hb_000700_020--Hb_128392_010 Hb_001205_290--Hb_001247_060 Hb_001205_290--Hb_012092_040 Hb_000270_050 Hb_000270_050 Hb_001205_290--Hb_000270_050 Hb_002970_030 Hb_002970_030 Hb_001205_290--Hb_002970_030 Hb_000089_090 Hb_000089_090 Hb_001205_290--Hb_000089_090 Hb_089140_070 Hb_089140_070 Hb_001205_290--Hb_089140_070 Hb_001247_060--Hb_000089_090 Hb_001247_060--Hb_012092_040 Hb_001247_060--Hb_000035_230 Hb_059502_010 Hb_059502_010 Hb_001247_060--Hb_059502_010 Hb_007304_020 Hb_007304_020 Hb_001247_060--Hb_007304_020 Hb_000531_010 Hb_000531_010 Hb_001247_060--Hb_000531_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.452621 0.711472 8.96473 11.4524 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.492032 0

CAGE analysis