Hb_004884_170

Information

Type -
Description -
Location Contig4884: 122638-128101
Sequence    

Annotation

kegg
ID rcu:RCOM_0847620
description Gamma-interferon-inducible lysosomal thiol reductase precursor, putative
nr
ID KFK43004.1
description hypothetical protein AALP_AA1G067000 [Arabis alpina]
swissprot
ID Q9ESY9
description Gamma-interferon-inducible lysosomal thiol reductase OS=Mus musculus GN=Ifi30 PE=1 SV=3
trembl
ID A0A087HLK2
description Uncharacterized protein OS=Arabis alpina GN=AALP_AA1G067000 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45151: 125830-127991
cDNA
(Sanger)
(ID:Location)		 015_D19.ab1: 126162-127988 , 027_G13.ab1: 126125-127988 , 036_M08.ab1: 126062-127988 , 042_C06.ab1: 126058-127988 , 042_J10.ab1: 126121-127988 , 053_K07.ab1: 126131-127988

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004884_170 0.0 - - hypothetical protein AALP_AA1G067000 [Arabis alpina]
2 Hb_012150_040 0.1283321791 - - conserved hypothetical protein [Ricinus communis]
3 Hb_001377_370 0.1286658043 - - PREDICTED: uncharacterized protein At4g00950 [Jatropha curcas]
4 Hb_000661_150 0.1314797856 - - ubiquitin-conjugating enzyme E2 C, putative [Ricinus communis]
5 Hb_001565_090 0.1370218863 - - PREDICTED: uncharacterized protein LOC105637840 isoform X1 [Jatropha curcas]
6 Hb_000069_650 0.1434609482 - - conserved hypothetical protein [Ricinus communis]
7 Hb_001950_090 0.1504661192 - - PREDICTED: microtubule-associated protein RP/EB family member 1C [Jatropha curcas]
8 Hb_000418_040 0.1512328153 - - hypothetical protein RCOM_0377590 [Ricinus communis]
9 Hb_072201_010 0.1522067742 - - PREDICTED: cell division control protein 2 homolog C [Jatropha curcas]
10 Hb_089140_070 0.153297572 - - PREDICTED: uncharacterized protein LOC105637961 [Jatropha curcas]
11 Hb_001699_270 0.155874887 - - PREDICTED: uncharacterized protein LOC105628996 [Jatropha curcas]
12 Hb_000878_120 0.1562111127 - - PREDICTED: protein downstream neighbor of Son [Jatropha curcas]
13 Hb_001322_160 0.1564815064 - - hypothetical protein JCGZ_03472 [Jatropha curcas]
14 Hb_005332_030 0.1564873484 - - conserved hypothetical protein [Ricinus communis]
15 Hb_006693_010 0.1583827384 - - PREDICTED: uncharacterized protein LOC105628875 [Jatropha curcas]
16 Hb_001971_040 0.1592595397 - - PREDICTED: beta-glucosidase 44-like [Jatropha curcas]
17 Hb_000522_160 0.1597074269 - - PREDICTED: probable serine/threonine-protein kinase At5g41260 [Jatropha curcas]
18 Hb_003813_110 0.1605510524 - - conserved hypothetical protein [Ricinus communis]
19 Hb_177195_010 0.1625420304 - - Leucine-rich repeat protein kinase family protein isoform 3, partial [Theobroma cacao]
20 Hb_006810_040 0.1626385782 - - Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_004884_170 Hb_004884_170 Hb_012150_040 Hb_012150_040 Hb_004884_170--Hb_012150_040 Hb_001377_370 Hb_001377_370 Hb_004884_170--Hb_001377_370 Hb_000661_150 Hb_000661_150 Hb_004884_170--Hb_000661_150 Hb_001565_090 Hb_001565_090 Hb_004884_170--Hb_001565_090 Hb_000069_650 Hb_000069_650 Hb_004884_170--Hb_000069_650 Hb_001950_090 Hb_001950_090 Hb_004884_170--Hb_001950_090 Hb_000317_120 Hb_000317_120 Hb_012150_040--Hb_000317_120 Hb_012150_040--Hb_001377_370 Hb_101133_050 Hb_101133_050 Hb_012150_040--Hb_101133_050 Hb_012150_040--Hb_000661_150 Hb_000742_180 Hb_000742_180 Hb_012150_040--Hb_000742_180 Hb_072201_010 Hb_072201_010 Hb_012150_040--Hb_072201_010 Hb_001377_370--Hb_000069_650 Hb_001377_370--Hb_001950_090 Hb_000289_020 Hb_000289_020 Hb_001377_370--Hb_000289_020 Hb_002028_270 Hb_002028_270 Hb_001377_370--Hb_002028_270 Hb_001377_370--Hb_000317_120 Hb_001699_270 Hb_001699_270 Hb_000661_150--Hb_001699_270 Hb_000661_150--Hb_101133_050 Hb_000661_150--Hb_001950_090 Hb_001688_100 Hb_001688_100 Hb_000661_150--Hb_001688_100 Hb_000418_040 Hb_000418_040 Hb_000661_150--Hb_000418_040 Hb_001307_150 Hb_001307_150 Hb_000661_150--Hb_001307_150 Hb_001565_090--Hb_000069_650 Hb_001565_090--Hb_000661_150 Hb_001565_090--Hb_000418_040 Hb_007474_020 Hb_007474_020 Hb_001565_090--Hb_007474_020 Hb_001565_090--Hb_001377_370 Hb_001390_040 Hb_001390_040 Hb_001565_090--Hb_001390_040 Hb_000069_650--Hb_001950_090 Hb_003847_060 Hb_003847_060 Hb_000069_650--Hb_003847_060 Hb_000069_650--Hb_001390_040 Hb_000069_650--Hb_072201_010 Hb_001950_090--Hb_003847_060 Hb_001950_090--Hb_001699_270 Hb_000345_450 Hb_000345_450 Hb_001950_090--Hb_000345_450 Hb_001950_090--Hb_000317_120 Hb_006588_100 Hb_006588_100 Hb_001950_090--Hb_006588_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0681274 0.136022 1.97757 2.1205 0.0567697 0.0505228
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0516328 0.0484219 0.329956 0.10782

CAGE analysis