Hb_000896_070

Information

Type -
Description -
Location Contig896: 53911-56074
Sequence    

Annotation

kegg
ID rcu:RCOM_0924880
description ammonium transporter, putative
nr
ID XP_002515551.1
description ammonium transporter, putative [Ricinus communis]
swissprot
ID Q84KJ6
description Ammonium transporter 3 member 1 OS=Oryza sativa subsp. japonica GN=AMT3-1 PE=2 SV=1
trembl
ID B9RP82
description Ammonium transporter OS=Ricinus communis GN=RCOM_0924880 PE=3 SV=1
Gene Ontology
ID GO:0016021
description ammonium transporter 3 member 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000896_070 0.0 - - ammonium transporter, putative [Ricinus communis]
2 Hb_001754_160 0.1477641065 - - PREDICTED: flowering-promoting factor 1-like protein 3 [Jatropha curcas]
3 Hb_000347_210 0.1622054259 - - PREDICTED: uncharacterized protein LOC105631371 [Jatropha curcas]
4 Hb_012799_080 0.1805846956 transcription factor TF Family: MYB Myb domain protein 18, putative [Theobroma cacao]
5 Hb_119808_020 0.2014195101 - - PREDICTED: premnaspirodiene oxygenase-like [Vitis vinifera]
6 Hb_000935_060 0.227392344 - - PREDICTED: 1-aminocyclopropane-1-carboxylate synthase 8-like [Jatropha curcas]
7 Hb_002936_020 0.2296747141 - - hypothetical protein VITISV_001748 [Vitis vinifera]
8 Hb_004102_150 0.2297463995 - - Late embryogenesis abundant protein D-7, putative [Ricinus communis]
9 Hb_160479_010 0.2309711498 - - hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis]
10 Hb_001541_220 0.2310423357 transcription factor TF Family: ERF hypothetical protein RCOM_0793640 [Ricinus communis]
11 Hb_000926_240 0.2312095129 - - hypothetical protein PRUPE_ppb018041mg [Prunus persica]
12 Hb_001369_510 0.2321609606 - - PREDICTED: uncharacterized protein LOC105766768 [Gossypium raimondii]
13 Hb_029508_020 0.2322168397 - - -
14 Hb_033691_010 0.2327450613 - - Lignin-forming anionic peroxidase precursor, putative [Ricinus communis]
15 Hb_010068_010 0.2331506977 - - PREDICTED: uncharacterized protein LOC105633273 [Jatropha curcas]
16 Hb_163989_010 0.2346032006 - - conserved hypothetical protein [Ricinus communis]
17 Hb_100953_010 0.2348453931 - - hypothetical protein JCGZ_10310 [Jatropha curcas]
18 Hb_007138_010 0.2377453833 - - PREDICTED: putative laccase-9 [Jatropha curcas]
19 Hb_091537_010 0.2378680428 transcription factor TF Family: NAC NAC domain-containing protein, putative [Ricinus communis]
20 Hb_003813_010 0.2441757893 transcription factor TF Family: bHLH PREDICTED: transcription factor BEE 1-like [Jatropha curcas]

Gene co-expression network

sample Hb_000896_070 Hb_000896_070 Hb_001754_160 Hb_001754_160 Hb_000896_070--Hb_001754_160 Hb_000347_210 Hb_000347_210 Hb_000896_070--Hb_000347_210 Hb_012799_080 Hb_012799_080 Hb_000896_070--Hb_012799_080 Hb_119808_020 Hb_119808_020 Hb_000896_070--Hb_119808_020 Hb_000935_060 Hb_000935_060 Hb_000896_070--Hb_000935_060 Hb_002936_020 Hb_002936_020 Hb_000896_070--Hb_002936_020 Hb_003643_030 Hb_003643_030 Hb_001754_160--Hb_003643_030 Hb_003266_070 Hb_003266_070 Hb_001754_160--Hb_003266_070 Hb_000116_200 Hb_000116_200 Hb_001754_160--Hb_000116_200 Hb_011099_010 Hb_011099_010 Hb_001754_160--Hb_011099_010 Hb_001195_210 Hb_001195_210 Hb_001754_160--Hb_001195_210 Hb_029508_020 Hb_029508_020 Hb_000347_210--Hb_029508_020 Hb_000541_030 Hb_000541_030 Hb_000347_210--Hb_000541_030 Hb_000347_210--Hb_012799_080 Hb_091537_010 Hb_091537_010 Hb_000347_210--Hb_091537_010 Hb_000347_210--Hb_119808_020 Hb_016734_050 Hb_016734_050 Hb_012799_080--Hb_016734_050 Hb_012799_080--Hb_029508_020 Hb_012799_080--Hb_000541_030 Hb_015175_060 Hb_015175_060 Hb_012799_080--Hb_015175_060 Hb_012799_080--Hb_119808_020 Hb_001541_220 Hb_001541_220 Hb_119808_020--Hb_001541_220 Hb_119808_020--Hb_029508_020 Hb_119808_020--Hb_000541_030 Hb_119808_020--Hb_091537_010 Hb_013654_030 Hb_013654_030 Hb_119808_020--Hb_013654_030 Hb_000281_050 Hb_000281_050 Hb_119808_020--Hb_000281_050 Hb_004102_150 Hb_004102_150 Hb_000935_060--Hb_004102_150 Hb_000926_240 Hb_000926_240 Hb_000935_060--Hb_000926_240 Hb_000917_070 Hb_000917_070 Hb_000935_060--Hb_000917_070 Hb_005144_140 Hb_005144_140 Hb_000935_060--Hb_005144_140 Hb_010068_010 Hb_010068_010 Hb_000935_060--Hb_010068_010 Hb_160479_010 Hb_160479_010 Hb_000935_060--Hb_160479_010 Hb_004319_100 Hb_004319_100 Hb_002936_020--Hb_004319_100 Hb_002894_070 Hb_002894_070 Hb_002936_020--Hb_002894_070 Hb_000616_100 Hb_000616_100 Hb_002936_020--Hb_000616_100 Hb_159012_010 Hb_159012_010 Hb_002936_020--Hb_159012_010 Hb_000194_030 Hb_000194_030 Hb_002936_020--Hb_000194_030 Hb_001529_010 Hb_001529_010 Hb_002936_020--Hb_001529_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0322481 0.180244 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.024971 0 0.0199387 0

CAGE analysis