Hb_001541_220

Information

Type transcription factor
Description TF Family: ERF
Location Contig1541: 198876-200081
Sequence    

Annotation

kegg
ID rcu:RCOM_0793640
description hypothetical protein
nr
ID XP_002530032.1
description hypothetical protein RCOM_0793640 [Ricinus communis]
swissprot
ID Q9FYK5
description Ethylene-responsive transcription factor ESR2 OS=Arabidopsis thaliana GN=ESR2 PE=1 SV=1
trembl
ID B9SVL3
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0793640 PE=4 SV=1
Gene Ontology
ID GO:0050794
description erf61

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001541_220 0.0 transcription factor TF Family: ERF hypothetical protein RCOM_0793640 [Ricinus communis]
2 Hb_146902_010 0.0719200205 - - conserved hypothetical protein [Ricinus communis]
3 Hb_119808_020 0.1202860291 - - PREDICTED: premnaspirodiene oxygenase-like [Vitis vinifera]
4 Hb_067034_020 0.1612783888 - - PREDICTED: iridoid synthase [Jatropha curcas]
5 Hb_011316_140 0.1812791485 - - PREDICTED: uncharacterized protein LOC105129591 [Populus euphratica]
6 Hb_013654_030 0.1860746149 - - Dehydration-responsive protein RD22 precursor, putative [Ricinus communis]
7 Hb_008971_030 0.1903436658 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000281_050 0.2185930289 - - PREDICTED: subtilisin-like protease SBT3.5 isoform X2 [Populus euphratica]
9 Hb_091537_010 0.2286153806 transcription factor TF Family: NAC NAC domain-containing protein, putative [Ricinus communis]
10 Hb_000896_070 0.2310423357 - - ammonium transporter, putative [Ricinus communis]
11 Hb_029508_020 0.2375397968 - - -
12 Hb_001102_310 0.2386860629 - - Protein AFR, putative [Ricinus communis]
13 Hb_011476_020 0.2440305102 - - PREDICTED: glutamate dehydrogenase 2-like [Jatropha curcas]
14 Hb_012799_080 0.2501488809 transcription factor TF Family: MYB Myb domain protein 18, putative [Theobroma cacao]
15 Hb_159327_010 0.2553394806 - - hypothetical protein JCGZ_23768 [Jatropha curcas]
16 Hb_000302_350 0.2557861065 - - polygalacturonase, putative [Ricinus communis]
17 Hb_000347_210 0.2592324148 - - PREDICTED: uncharacterized protein LOC105631371 [Jatropha curcas]
18 Hb_000541_030 0.2595123497 - - conserved hypothetical protein [Ricinus communis]
19 Hb_003813_010 0.2713348003 transcription factor TF Family: bHLH PREDICTED: transcription factor BEE 1-like [Jatropha curcas]
20 Hb_015175_060 0.2739404087 - - copper transport protein atox1, putative [Ricinus communis]

Gene co-expression network

sample Hb_001541_220 Hb_001541_220 Hb_146902_010 Hb_146902_010 Hb_001541_220--Hb_146902_010 Hb_119808_020 Hb_119808_020 Hb_001541_220--Hb_119808_020 Hb_067034_020 Hb_067034_020 Hb_001541_220--Hb_067034_020 Hb_011316_140 Hb_011316_140 Hb_001541_220--Hb_011316_140 Hb_013654_030 Hb_013654_030 Hb_001541_220--Hb_013654_030 Hb_008971_030 Hb_008971_030 Hb_001541_220--Hb_008971_030 Hb_146902_010--Hb_119808_020 Hb_146902_010--Hb_008971_030 Hb_146902_010--Hb_011316_140 Hb_146902_010--Hb_067034_020 Hb_000284_280 Hb_000284_280 Hb_146902_010--Hb_000284_280 Hb_029508_020 Hb_029508_020 Hb_119808_020--Hb_029508_020 Hb_000541_030 Hb_000541_030 Hb_119808_020--Hb_000541_030 Hb_091537_010 Hb_091537_010 Hb_119808_020--Hb_091537_010 Hb_119808_020--Hb_013654_030 Hb_000281_050 Hb_000281_050 Hb_119808_020--Hb_000281_050 Hb_000836_150 Hb_000836_150 Hb_067034_020--Hb_000836_150 Hb_001102_310 Hb_001102_310 Hb_067034_020--Hb_001102_310 Hb_067034_020--Hb_119808_020 Hb_000740_020 Hb_000740_020 Hb_067034_020--Hb_000740_020 Hb_011316_140--Hb_119808_020 Hb_011316_140--Hb_013654_030 Hb_011316_140--Hb_000281_050 Hb_000350_040 Hb_000350_040 Hb_011316_140--Hb_000350_040 Hb_015175_060 Hb_015175_060 Hb_013654_030--Hb_015175_060 Hb_011476_020 Hb_011476_020 Hb_013654_030--Hb_011476_020 Hb_016734_050 Hb_016734_050 Hb_013654_030--Hb_016734_050 Hb_159327_010 Hb_159327_010 Hb_013654_030--Hb_159327_010 Hb_000111_440 Hb_000111_440 Hb_008971_030--Hb_000111_440 Hb_001431_100 Hb_001431_100 Hb_008971_030--Hb_001431_100 Hb_008971_030--Hb_159327_010 Hb_008971_030--Hb_119808_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0410206 0.124169 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0317237 0 0 0

CAGE analysis