Hb_159327_010

Information

Type -
Description -
Location Contig159327: 788-2896
Sequence    

Annotation

kegg
ID pop:POPTR_0017s06310g
description hypothetical protein
nr
ID KDP42826.1
description hypothetical protein JCGZ_23768 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067L2Z5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23768 PE=3 SV=1
Gene Ontology
ID GO:0016301
description probable receptor-like protein kinase at1g67000

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_159327_010 0.0 - - hypothetical protein JCGZ_23768 [Jatropha curcas]
2 Hb_013654_030 0.1972259017 - - Dehydration-responsive protein RD22 precursor, putative [Ricinus communis]
3 Hb_008971_030 0.2092692725 - - conserved hypothetical protein [Ricinus communis]
4 Hb_015175_060 0.2177089428 - - copper transport protein atox1, putative [Ricinus communis]
5 Hb_004308_020 0.2383094866 - - hypothetical protein POPTR_0005s15590g [Populus trichocarpa]
6 Hb_011476_020 0.2426206827 - - PREDICTED: glutamate dehydrogenase 2-like [Jatropha curcas]
7 Hb_004785_050 0.2484541066 - - PREDICTED: serine decarboxylase [Jatropha curcas]
8 Hb_016734_050 0.2490365836 transcription factor TF Family: C2C2-GATA GATA transcription factor, putative [Ricinus communis]
9 Hb_001541_220 0.2553394806 transcription factor TF Family: ERF hypothetical protein RCOM_0793640 [Ricinus communis]
10 Hb_004112_060 0.2553693451 - - hypothetical protein POPTR_0017s01950g, partial [Populus trichocarpa]
11 Hb_001688_090 0.2573339315 - - alcohol dehydrogenase 7 [Vitis vinifera]
12 Hb_146902_010 0.2590547296 - - conserved hypothetical protein [Ricinus communis]
13 Hb_119808_020 0.2601381968 - - PREDICTED: premnaspirodiene oxygenase-like [Vitis vinifera]
14 Hb_000977_200 0.2639927928 - - PREDICTED: acyl-[acyl-carrier-protein] desaturase, chloroplastic-like [Jatropha curcas]
15 Hb_001431_100 0.268017915 - - PREDICTED: probable protein phosphatase 2C 27 [Jatropha curcas]
16 Hb_000988_010 0.270877359 - - hypothetical protein POPTR_0004s17730g [Populus trichocarpa]
17 Hb_000039_080 0.2719345951 - - cyclin d, putative [Ricinus communis]
18 Hb_003376_370 0.2719908322 - - protein binding protein, putative [Ricinus communis]
19 Hb_012799_080 0.2742802861 transcription factor TF Family: MYB Myb domain protein 18, putative [Theobroma cacao]
20 Hb_007290_040 0.274520351 - - PREDICTED: histidine-containing phosphotransfer protein 1-like [Jatropha curcas]

Gene co-expression network

sample Hb_159327_010 Hb_159327_010 Hb_013654_030 Hb_013654_030 Hb_159327_010--Hb_013654_030 Hb_008971_030 Hb_008971_030 Hb_159327_010--Hb_008971_030 Hb_015175_060 Hb_015175_060 Hb_159327_010--Hb_015175_060 Hb_004308_020 Hb_004308_020 Hb_159327_010--Hb_004308_020 Hb_011476_020 Hb_011476_020 Hb_159327_010--Hb_011476_020 Hb_004785_050 Hb_004785_050 Hb_159327_010--Hb_004785_050 Hb_119808_020 Hb_119808_020 Hb_013654_030--Hb_119808_020 Hb_013654_030--Hb_015175_060 Hb_013654_030--Hb_011476_020 Hb_001541_220 Hb_001541_220 Hb_013654_030--Hb_001541_220 Hb_016734_050 Hb_016734_050 Hb_013654_030--Hb_016734_050 Hb_146902_010 Hb_146902_010 Hb_008971_030--Hb_146902_010 Hb_008971_030--Hb_001541_220 Hb_000111_440 Hb_000111_440 Hb_008971_030--Hb_000111_440 Hb_001431_100 Hb_001431_100 Hb_008971_030--Hb_001431_100 Hb_008971_030--Hb_119808_020 Hb_015175_060--Hb_016734_050 Hb_056718_010 Hb_056718_010 Hb_015175_060--Hb_056718_010 Hb_012799_080 Hb_012799_080 Hb_015175_060--Hb_012799_080 Hb_001246_080 Hb_001246_080 Hb_015175_060--Hb_001246_080 Hb_010812_080 Hb_010812_080 Hb_015175_060--Hb_010812_080 Hb_001810_040 Hb_001810_040 Hb_004308_020--Hb_001810_040 Hb_000352_240 Hb_000352_240 Hb_004308_020--Hb_000352_240 Hb_004308_020--Hb_001431_100 Hb_006469_110 Hb_006469_110 Hb_004308_020--Hb_006469_110 Hb_002309_030 Hb_002309_030 Hb_004308_020--Hb_002309_030 Hb_001369_500 Hb_001369_500 Hb_004308_020--Hb_001369_500 Hb_011476_020--Hb_001541_220 Hb_011476_020--Hb_146902_010 Hb_000896_070 Hb_000896_070 Hb_011476_020--Hb_000896_070 Hb_011476_020--Hb_119808_020 Hb_004785_050--Hb_004308_020 Hb_128473_010 Hb_128473_010 Hb_004785_050--Hb_128473_010 Hb_000261_170 Hb_000261_170 Hb_004785_050--Hb_000261_170 Hb_007210_020 Hb_007210_020 Hb_004785_050--Hb_007210_020 Hb_003813_010 Hb_003813_010 Hb_004785_050--Hb_003813_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0171052 0.0283992 0.142525 0.405647 0.0331722 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.061439 0 0 0

CAGE analysis