Hb_004785_050

Information

Type -
Description -
Location Contig4785: 55527-59207
Sequence    

Annotation

kegg
ID pop:POPTR_0005s21280g
description POPTRDRAFT_559359; serine decarboxylase family protein
nr
ID XP_012066036.1
description PREDICTED: serine decarboxylase [Jatropha curcas]
swissprot
ID Q9MA74
description Serine decarboxylase OS=Arabidopsis thaliana GN=SDC PE=1 SV=1
trembl
ID A0A067L6X9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25194 PE=3 SV=1
Gene Ontology
ID GO:0005829
description serine decarboxylase-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004785_050 0.0 - - PREDICTED: serine decarboxylase [Jatropha curcas]
2 Hb_004308_020 0.2156304276 - - hypothetical protein POPTR_0005s15590g [Populus trichocarpa]
3 Hb_128473_010 0.2158104344 - - -
4 Hb_000261_170 0.2411740055 - - Anthranilate N-benzoyltransferase protein, putative [Ricinus communis]
5 Hb_159327_010 0.2484541066 - - hypothetical protein JCGZ_23768 [Jatropha curcas]
6 Hb_007210_020 0.2533685818 - - PREDICTED: hexaprenyldihydroxybenzoate methyltransferase, mitochondrial-like [Solanum tuberosum]
7 Hb_003813_010 0.2570225515 transcription factor TF Family: bHLH PREDICTED: transcription factor BEE 1-like [Jatropha curcas]
8 Hb_000707_040 0.266005435 - - Uncharacterized protein TCM_021829 [Theobroma cacao]
9 Hb_118228_010 0.2717355566 - - PREDICTED: pirin-like protein [Jatropha curcas]
10 Hb_000100_060 0.2728411124 - - PREDICTED: probable glucan endo-1,3-beta-glucosidase A6 [Populus euphratica]
11 Hb_002243_050 0.2765947201 - - PREDICTED: ion channel DMI1-like isoform X2 [Jatropha curcas]
12 Hb_001621_120 0.2774792664 - - Zeamatin precursor, putative [Ricinus communis]
13 Hb_003536_090 0.2784762825 - - transferase, transferring glycosyl groups, putative [Ricinus communis]
14 Hb_000345_070 0.2817561385 rubber biosynthesis Gene Name: SRPP6 -
15 Hb_123301_010 0.2838748923 - - conserved hypothetical protein [Ricinus communis]
16 Hb_005144_170 0.2844232624 - - PREDICTED: shugoshin-1-like isoform X2 [Jatropha curcas]
17 Hb_004218_100 0.2844321418 - - PREDICTED: DNA-directed RNA polymerase V subunit 5C [Jatropha curcas]
18 Hb_001810_040 0.2850214783 - - -
19 Hb_000413_080 0.2866165795 - - -
20 Hb_002164_010 0.2870796077 - - Stellacyanin, putative [Ricinus communis]

Gene co-expression network

sample Hb_004785_050 Hb_004785_050 Hb_004308_020 Hb_004308_020 Hb_004785_050--Hb_004308_020 Hb_128473_010 Hb_128473_010 Hb_004785_050--Hb_128473_010 Hb_000261_170 Hb_000261_170 Hb_004785_050--Hb_000261_170 Hb_159327_010 Hb_159327_010 Hb_004785_050--Hb_159327_010 Hb_007210_020 Hb_007210_020 Hb_004785_050--Hb_007210_020 Hb_003813_010 Hb_003813_010 Hb_004785_050--Hb_003813_010 Hb_001810_040 Hb_001810_040 Hb_004308_020--Hb_001810_040 Hb_000352_240 Hb_000352_240 Hb_004308_020--Hb_000352_240 Hb_001431_100 Hb_001431_100 Hb_004308_020--Hb_001431_100 Hb_006469_110 Hb_006469_110 Hb_004308_020--Hb_006469_110 Hb_002309_030 Hb_002309_030 Hb_004308_020--Hb_002309_030 Hb_001369_500 Hb_001369_500 Hb_004308_020--Hb_001369_500 Hb_128473_010--Hb_000261_170 Hb_073799_010 Hb_073799_010 Hb_128473_010--Hb_073799_010 Hb_000649_340 Hb_000649_340 Hb_128473_010--Hb_000649_340 Hb_000311_040 Hb_000311_040 Hb_128473_010--Hb_000311_040 Hb_008185_020 Hb_008185_020 Hb_128473_010--Hb_008185_020 Hb_000483_400 Hb_000483_400 Hb_128473_010--Hb_000483_400 Hb_001355_120 Hb_001355_120 Hb_000261_170--Hb_001355_120 Hb_000261_170--Hb_000649_340 Hb_001828_100 Hb_001828_100 Hb_000261_170--Hb_001828_100 Hb_004158_100 Hb_004158_100 Hb_000261_170--Hb_004158_100 Hb_013654_030 Hb_013654_030 Hb_159327_010--Hb_013654_030 Hb_008971_030 Hb_008971_030 Hb_159327_010--Hb_008971_030 Hb_015175_060 Hb_015175_060 Hb_159327_010--Hb_015175_060 Hb_159327_010--Hb_004308_020 Hb_011476_020 Hb_011476_020 Hb_159327_010--Hb_011476_020 Hb_000109_230 Hb_000109_230 Hb_007210_020--Hb_000109_230 Hb_000191_140 Hb_000191_140 Hb_007210_020--Hb_000191_140 Hb_005144_170 Hb_005144_170 Hb_007210_020--Hb_005144_170 Hb_007210_020--Hb_128473_010 Hb_000157_050 Hb_000157_050 Hb_007210_020--Hb_000157_050 Hb_014720_100 Hb_014720_100 Hb_003813_010--Hb_014720_100 Hb_001097_080 Hb_001097_080 Hb_003813_010--Hb_001097_080 Hb_000413_080 Hb_000413_080 Hb_003813_010--Hb_000413_080 Hb_003875_010 Hb_003875_010 Hb_003813_010--Hb_003875_010 Hb_017002_010 Hb_017002_010 Hb_003813_010--Hb_017002_010 Hb_007382_130 Hb_007382_130 Hb_003813_010--Hb_007382_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.124634 0.0499654 0.143794 0.867451 0.0108813 0.0101795
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0528798 0.145617 0 0 0

CAGE analysis