Hb_005144_170

Information

Type -
Description -
Location Contig5144: 117479-120354
Sequence    

Annotation

kegg
ID cit:102629425
description shugoshin-1-like
nr
ID XP_012072880.1
description PREDICTED: shugoshin-1-like isoform X2 [Jatropha curcas]
swissprot
ID Q4QSC8
description Shugoshin-1 OS=Zea mays GN=SGO1 PE=2 SV=1
trembl
ID A0A067L008
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08290 PE=4 SV=1
Gene Ontology
ID GO:0000775
description shugoshin-1-like isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46453: 115652-116834 , PASA_asmbl_46455: 119664-120338
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005144_170 0.0 - - PREDICTED: shugoshin-1-like isoform X2 [Jatropha curcas]
2 Hb_004117_330 0.1705440452 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000191_140 0.1814316856 - - PREDICTED: growth-regulating factor 1-like isoform X2 [Jatropha curcas]
4 Hb_001143_230 0.1829609066 - - beta-galactosidase family protein [Populus trichocarpa]
5 Hb_002774_120 0.1873061168 - - PREDICTED: uncharacterized protein LOC105630593 [Jatropha curcas]
6 Hb_002490_030 0.1878428657 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000413_080 0.1893627783 - - -
8 Hb_053709_040 0.193167562 - - putative actin-97 protein [Linum usitatissimum]
9 Hb_000816_190 0.1960401046 - - conserved hypothetical protein [Ricinus communis]
10 Hb_001053_210 0.1964791012 - - -
11 Hb_003207_150 0.2032129355 - - PREDICTED: SPX domain-containing membrane protein At4g22990-like [Jatropha curcas]
12 Hb_001366_170 0.2041873929 - - PREDICTED: uncharacterized protein C594.04c [Jatropha curcas]
13 Hb_002602_030 0.2060359736 - - PREDICTED: chaperone protein dnaJ 11, chloroplastic [Jatropha curcas]
14 Hb_000740_090 0.2079955485 - - conserved hypothetical protein [Ricinus communis]
15 Hb_002272_200 0.2080152203 - - PREDICTED: GDSL esterase/lipase At1g54790 isoform X1 [Jatropha curcas]
16 Hb_000363_260 0.2086772597 - - glycerophosphoryl diester phosphodiesterase, putative [Ricinus communis]
17 Hb_008185_020 0.2099912659 - - RING-H2 finger protein ATL3J, putative [Ricinus communis]
18 Hb_000581_030 0.210734306 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000997_380 0.2129670431 - - PREDICTED: armadillo repeat-containing protein LFR [Jatropha curcas]
20 Hb_034726_010 0.2153232436 - - PREDICTED: chaperone protein dnaJ 1, mitochondrial isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_005144_170 Hb_005144_170 Hb_004117_330 Hb_004117_330 Hb_005144_170--Hb_004117_330 Hb_000191_140 Hb_000191_140 Hb_005144_170--Hb_000191_140 Hb_001143_230 Hb_001143_230 Hb_005144_170--Hb_001143_230 Hb_002774_120 Hb_002774_120 Hb_005144_170--Hb_002774_120 Hb_002490_030 Hb_002490_030 Hb_005144_170--Hb_002490_030 Hb_000413_080 Hb_000413_080 Hb_005144_170--Hb_000413_080 Hb_004117_330--Hb_000413_080 Hb_007575_090 Hb_007575_090 Hb_004117_330--Hb_007575_090 Hb_008185_020 Hb_008185_020 Hb_004117_330--Hb_008185_020 Hb_000302_100 Hb_000302_100 Hb_004117_330--Hb_000302_100 Hb_066514_010 Hb_066514_010 Hb_004117_330--Hb_066514_010 Hb_118283_010 Hb_118283_010 Hb_000191_140--Hb_118283_010 Hb_001195_130 Hb_001195_130 Hb_000191_140--Hb_001195_130 Hb_017439_010 Hb_017439_010 Hb_000191_140--Hb_017439_010 Hb_012286_060 Hb_012286_060 Hb_000191_140--Hb_012286_060 Hb_000932_050 Hb_000932_050 Hb_000191_140--Hb_000932_050 Hb_001143_230--Hb_004117_330 Hb_002602_030 Hb_002602_030 Hb_001143_230--Hb_002602_030 Hb_001005_200 Hb_001005_200 Hb_001143_230--Hb_001005_200 Hb_001143_230--Hb_000413_080 Hb_000997_380 Hb_000997_380 Hb_001143_230--Hb_000997_380 Hb_000363_260 Hb_000363_260 Hb_002774_120--Hb_000363_260 Hb_000684_220 Hb_000684_220 Hb_002774_120--Hb_000684_220 Hb_006570_090 Hb_006570_090 Hb_002774_120--Hb_006570_090 Hb_003929_190 Hb_003929_190 Hb_002774_120--Hb_003929_190 Hb_179960_010 Hb_179960_010 Hb_002774_120--Hb_179960_010 Hb_003540_120 Hb_003540_120 Hb_002774_120--Hb_003540_120 Hb_002272_200 Hb_002272_200 Hb_002490_030--Hb_002272_200 Hb_002900_100 Hb_002900_100 Hb_002490_030--Hb_002900_100 Hb_124951_020 Hb_124951_020 Hb_002490_030--Hb_124951_020 Hb_000816_190 Hb_000816_190 Hb_002490_030--Hb_000816_190 Hb_001366_170 Hb_001366_170 Hb_002490_030--Hb_001366_170 Hb_002490_030--Hb_066514_010 Hb_000413_080--Hb_002272_200 Hb_000011_250 Hb_000011_250 Hb_000413_080--Hb_000011_250 Hb_000413_080--Hb_002490_030 Hb_000413_080--Hb_000302_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.717955 0.448797 2.22987 6.80425 0.122606 0.396326
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.369952 0.81442 0 0.873405 0.695601

CAGE analysis