Hb_001005_200

Information

Type -
Description -
Location Contig1005: 212615-219649
Sequence    

Annotation

kegg
ID rcu:RCOM_1444750
description serine/threonine protein kinase, putative
nr
ID XP_012067378.1
description PREDICTED: receptor-like protein kinase HERK 1 isoform X2 [Jatropha curcas]
swissprot
ID Q9SA72
description Probable receptor-like protein kinase At1g30570 OS=Arabidopsis thaliana GN=At1g30570 PE=3 SV=1
trembl
ID A0A067LBK0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26888 PE=3 SV=1
Gene Ontology
ID GO:0005886
description receptor-like protein kinase herk 1 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00347: 218026-218706
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001005_200 0.0 - - PREDICTED: receptor-like protein kinase HERK 1 isoform X2 [Jatropha curcas]
2 Hb_004126_040 0.1850221947 - - conserved hypothetical protein [Ricinus communis]
3 Hb_014497_040 0.1886561963 - - PREDICTED: calvin cycle protein CP12-3, chloroplastic [Jatropha curcas]
4 Hb_000003_310 0.1895815524 - - PREDICTED: glycosyltransferase-like KOBITO 1 [Jatropha curcas]
5 Hb_000236_160 0.1896756235 - - PREDICTED: UDP-glucuronate 4-epimerase 6 [Jatropha curcas]
6 Hb_000622_350 0.1924423148 - - PREDICTED: protein ABIL1 [Jatropha curcas]
7 Hb_000926_340 0.1958502142 - - PREDICTED: EH domain-containing protein 1 isoform X1 [Jatropha curcas]
8 Hb_000720_080 0.1972934991 - - PREDICTED: bifunctional UDP-glucose 4-epimerase and UDP-xylose 4-epimerase 1 [Jatropha curcas]
9 Hb_050034_010 0.1983293729 - - PREDICTED: cullin-1 [Jatropha curcas]
10 Hb_000684_310 0.2000590857 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g67720 [Jatropha curcas]
11 Hb_007192_020 0.2006526499 - - PREDICTED: high-affinity nitrate transporter 3.1-like [Jatropha curcas]
12 Hb_003878_200 0.2015310506 - - PREDICTED: V-type proton ATPase subunit D-like [Jatropha curcas]
13 Hb_003462_110 0.2020341979 - - hevamine-A precursor, putative [Ricinus communis]
14 Hb_020586_010 0.2029911205 - - Alpha-N-arabinofuranosidase 1 precursor, putative [Ricinus communis]
15 Hb_000094_290 0.2030868831 - - PREDICTED: outer envelope pore protein 24B, chloroplastic-like [Jatropha curcas]
16 Hb_003964_020 0.2034488593 transcription factor TF Family: C2H2 hypothetical protein RCOM_1621120 [Ricinus communis]
17 Hb_006634_110 0.2045379607 - - BnaC04g40780D [Brassica napus]
18 Hb_000665_190 0.2047627208 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000300_090 0.2054380043 - - catalytic, putative [Ricinus communis]
20 Hb_005941_030 0.2076256253 transcription factor TF Family: HB DNA binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_001005_200 Hb_001005_200 Hb_004126_040 Hb_004126_040 Hb_001005_200--Hb_004126_040 Hb_014497_040 Hb_014497_040 Hb_001005_200--Hb_014497_040 Hb_000003_310 Hb_000003_310 Hb_001005_200--Hb_000003_310 Hb_000236_160 Hb_000236_160 Hb_001005_200--Hb_000236_160 Hb_000622_350 Hb_000622_350 Hb_001005_200--Hb_000622_350 Hb_000926_340 Hb_000926_340 Hb_001005_200--Hb_000926_340 Hb_000256_230 Hb_000256_230 Hb_004126_040--Hb_000256_230 Hb_000389_030 Hb_000389_030 Hb_004126_040--Hb_000389_030 Hb_000665_170 Hb_000665_170 Hb_004126_040--Hb_000665_170 Hb_003209_130 Hb_003209_130 Hb_004126_040--Hb_003209_130 Hb_000622_110 Hb_000622_110 Hb_004126_040--Hb_000622_110 Hb_003878_200 Hb_003878_200 Hb_004126_040--Hb_003878_200 Hb_005941_030 Hb_005941_030 Hb_014497_040--Hb_005941_030 Hb_000012_400 Hb_000012_400 Hb_014497_040--Hb_000012_400 Hb_003029_060 Hb_003029_060 Hb_014497_040--Hb_003029_060 Hb_010812_110 Hb_010812_110 Hb_014497_040--Hb_010812_110 Hb_000562_100 Hb_000562_100 Hb_014497_040--Hb_000562_100 Hb_004631_170 Hb_004631_170 Hb_014497_040--Hb_004631_170 Hb_000254_070 Hb_000254_070 Hb_000003_310--Hb_000254_070 Hb_000701_030 Hb_000701_030 Hb_000003_310--Hb_000701_030 Hb_021576_070 Hb_021576_070 Hb_000003_310--Hb_021576_070 Hb_000684_310 Hb_000684_310 Hb_000003_310--Hb_000684_310 Hb_000679_040 Hb_000679_040 Hb_000003_310--Hb_000679_040 Hb_000418_020 Hb_000418_020 Hb_000003_310--Hb_000418_020 Hb_000684_220 Hb_000684_220 Hb_000236_160--Hb_000684_220 Hb_002774_120 Hb_002774_120 Hb_000236_160--Hb_002774_120 Hb_003929_190 Hb_003929_190 Hb_000236_160--Hb_003929_190 Hb_000236_160--Hb_000012_400 Hb_000236_160--Hb_010812_110 Hb_030565_050 Hb_030565_050 Hb_000236_160--Hb_030565_050 Hb_000173_060 Hb_000173_060 Hb_000622_350--Hb_000173_060 Hb_002660_110 Hb_002660_110 Hb_000622_350--Hb_002660_110 Hb_000622_350--Hb_004126_040 Hb_000094_290 Hb_000094_290 Hb_000622_350--Hb_000094_290 Hb_000074_100 Hb_000074_100 Hb_000622_350--Hb_000074_100 Hb_000889_100 Hb_000889_100 Hb_000622_350--Hb_000889_100 Hb_000926_340--Hb_000622_110 Hb_000926_340--Hb_004126_040 Hb_000926_340--Hb_000418_020 Hb_000926_340--Hb_000256_230 Hb_002486_050 Hb_002486_050 Hb_000926_340--Hb_002486_050 Hb_000926_340--Hb_003209_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.75441 1.21026 2.07514 9.85921 1.66478 2.40067
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0898639 2.05066 0.242568 2.24667 3.84649

CAGE analysis