Hb_000889_100

Information

Type -
Description -
Location Contig889: 190797-192655
Sequence    

Annotation

kegg
ID rcu:RCOM_1362940
description syntaxin, putative
nr
ID XP_011079016.1
description PREDICTED: syntaxin-132-like isoform X2 [Sesamum indicum]
swissprot
ID Q8VZU2
description Syntaxin-132 OS=Arabidopsis thaliana GN=SYP132 PE=1 SV=1
trembl
ID B9SUS4
description Syntaxin, putative OS=Ricinus communis GN=RCOM_1362940 PE=4 SV=1
Gene Ontology
ID GO:0016020
description syntaxin-132-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000889_100 0.0 - - PREDICTED: syntaxin-132-like isoform X2 [Sesamum indicum]
2 Hb_051257_010 0.1023290185 - - -
3 Hb_017014_010 0.1056864823 - - PREDICTED: syntaxin-132-like isoform X1 [Jatropha curcas]
4 Hb_000035_220 0.1064905066 - - PREDICTED: transmembrane 9 superfamily member 8 [Jatropha curcas]
5 Hb_164010_050 0.1166885184 - - PREDICTED: phosphatidylinositol/phosphatidylcholine transfer protein SFH1 [Jatropha curcas]
6 Hb_000622_350 0.1185970804 - - PREDICTED: protein ABIL1 [Jatropha curcas]
7 Hb_000094_290 0.1198579036 - - PREDICTED: outer envelope pore protein 24B, chloroplastic-like [Jatropha curcas]
8 Hb_002486_050 0.1214997586 - - Multiple inositol polyphosphate phosphatase 1 precursor, putative [Ricinus communis]
9 Hb_010003_010 0.1216258212 - - PREDICTED: uncharacterized protein LOC105630174 isoform X2 [Jatropha curcas]
10 Hb_012194_060 0.1234504618 - - PREDICTED: uncharacterized protein LOC105636108 [Jatropha curcas]
11 Hb_000066_030 0.123771882 - - PREDICTED: uncharacterized protein LOC105643898 isoform X2 [Jatropha curcas]
12 Hb_000077_290 0.1249276185 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000656_160 0.1259107759 - - PREDICTED: transmembrane protein 87A [Jatropha curcas]
14 Hb_004126_040 0.1274703308 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000684_260 0.1276106734 - - PREDICTED: probable DNA helicase MCM8 isoform X2 [Jatropha curcas]
16 Hb_003540_080 0.1294320634 - - leucine-rich repeat-containing protein, putative [Ricinus communis]
17 Hb_000152_190 0.1301260131 - - PREDICTED: K(+) efflux antiporter 5 [Jatropha curcas]
18 Hb_000103_250 0.1310369993 transcription factor TF Family: Tify PREDICTED: protein TIFY 4B isoform X3 [Jatropha curcas]
19 Hb_029695_050 0.1342864509 - - PREDICTED: fasciclin-like arabinogalactan protein 1 [Jatropha curcas]
20 Hb_000503_020 0.1361161755 - - PREDICTED: calcium-dependent protein kinase 13 [Jatropha curcas]

Gene co-expression network

sample Hb_000889_100 Hb_000889_100 Hb_051257_010 Hb_051257_010 Hb_000889_100--Hb_051257_010 Hb_017014_010 Hb_017014_010 Hb_000889_100--Hb_017014_010 Hb_000035_220 Hb_000035_220 Hb_000889_100--Hb_000035_220 Hb_164010_050 Hb_164010_050 Hb_000889_100--Hb_164010_050 Hb_000622_350 Hb_000622_350 Hb_000889_100--Hb_000622_350 Hb_000094_290 Hb_000094_290 Hb_000889_100--Hb_000094_290 Hb_051257_010--Hb_164010_050 Hb_000684_260 Hb_000684_260 Hb_051257_010--Hb_000684_260 Hb_134429_010 Hb_134429_010 Hb_051257_010--Hb_134429_010 Hb_051257_010--Hb_000094_290 Hb_010003_010 Hb_010003_010 Hb_051257_010--Hb_010003_010 Hb_002611_030 Hb_002611_030 Hb_017014_010--Hb_002611_030 Hb_017014_010--Hb_010003_010 Hb_100137_010 Hb_100137_010 Hb_017014_010--Hb_100137_010 Hb_048702_010 Hb_048702_010 Hb_017014_010--Hb_048702_010 Hb_000077_290 Hb_000077_290 Hb_017014_010--Hb_000077_290 Hb_003540_080 Hb_003540_080 Hb_000035_220--Hb_003540_080 Hb_000510_150 Hb_000510_150 Hb_000035_220--Hb_000510_150 Hb_000665_170 Hb_000665_170 Hb_000035_220--Hb_000665_170 Hb_000256_230 Hb_000256_230 Hb_000035_220--Hb_000256_230 Hb_012194_060 Hb_012194_060 Hb_000035_220--Hb_012194_060 Hb_004126_040 Hb_004126_040 Hb_000035_220--Hb_004126_040 Hb_000866_070 Hb_000866_070 Hb_164010_050--Hb_000866_070 Hb_000000_330 Hb_000000_330 Hb_164010_050--Hb_000000_330 Hb_000258_220 Hb_000258_220 Hb_164010_050--Hb_000258_220 Hb_074399_010 Hb_074399_010 Hb_164010_050--Hb_074399_010 Hb_000503_020 Hb_000503_020 Hb_164010_050--Hb_000503_020 Hb_000173_060 Hb_000173_060 Hb_000622_350--Hb_000173_060 Hb_002660_110 Hb_002660_110 Hb_000622_350--Hb_002660_110 Hb_000622_350--Hb_004126_040 Hb_000622_350--Hb_000094_290 Hb_000074_100 Hb_000074_100 Hb_000622_350--Hb_000074_100 Hb_000094_290--Hb_000173_060 Hb_000300_090 Hb_000300_090 Hb_000094_290--Hb_000300_090 Hb_011926_040 Hb_011926_040 Hb_000094_290--Hb_011926_040 Hb_000094_290--Hb_010003_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
15.6519 12.5685 35.8057 79.5752 10.0678 32.0304
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.6313 8.30875 16.602 17.9322 23.6048

CAGE analysis