Hb_010003_010

Information

Type -
Description -
Location Contig10003: 2030-3437
Sequence    

Annotation

kegg
ID rcu:RCOM_1446800
description hypothetical protein
nr
ID XP_012067301.1
description PREDICTED: uncharacterized protein LOC105630174 isoform X2 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067L042
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26829 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00212: 3425-7401
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010003_010 0.0 - - PREDICTED: uncharacterized protein LOC105630174 isoform X2 [Jatropha curcas]
2 Hb_000889_100 0.1216258212 - - PREDICTED: syntaxin-132-like isoform X2 [Sesamum indicum]
3 Hb_000094_290 0.1234127208 - - PREDICTED: outer envelope pore protein 24B, chloroplastic-like [Jatropha curcas]
4 Hb_000077_290 0.1255524555 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000230_180 0.12678766 - - prolyl 4-hydroxylase alpha subunit, putative [Ricinus communis]
6 Hb_051257_010 0.1299237393 - - -
7 Hb_005170_010 0.1303305278 - - -
8 Hb_002122_010 0.1304594545 - - -
9 Hb_012194_060 0.1345984116 - - PREDICTED: uncharacterized protein LOC105636108 [Jatropha curcas]
10 Hb_017014_010 0.1351077911 - - PREDICTED: syntaxin-132-like isoform X1 [Jatropha curcas]
11 Hb_006810_030 0.1352188683 - - Uncharacterized protein isoform 1 [Theobroma cacao]
12 Hb_002611_020 0.1400204449 - - PREDICTED: alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase-like [Populus euphratica]
13 Hb_010655_020 0.1435871842 - - hypothetical protein CICLE_v10032410mg [Citrus clementina]
14 Hb_002400_330 0.1456425603 - - PREDICTED: ER membrane protein complex subunit 7 homolog isoform X2 [Jatropha curcas]
15 Hb_031931_020 0.1468987942 - - Minor histocompatibility antigen H13, putative [Ricinus communis]
16 Hb_050912_010 0.1473461472 - - PREDICTED: amidase 1-like isoform X2 [Jatropha curcas]
17 Hb_001491_030 0.1482359014 - - PREDICTED: uncharacterized protein LOC105649804 isoform X1 [Jatropha curcas]
18 Hb_000300_090 0.1511750426 - - catalytic, putative [Ricinus communis]
19 Hb_000056_130 0.1529966276 - - Sucrose Transporter 2C [Hevea brasiliensis subsp. brasiliensis]
20 Hb_134429_010 0.1535895063 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_010003_010 Hb_010003_010 Hb_000889_100 Hb_000889_100 Hb_010003_010--Hb_000889_100 Hb_000094_290 Hb_000094_290 Hb_010003_010--Hb_000094_290 Hb_000077_290 Hb_000077_290 Hb_010003_010--Hb_000077_290 Hb_000230_180 Hb_000230_180 Hb_010003_010--Hb_000230_180 Hb_051257_010 Hb_051257_010 Hb_010003_010--Hb_051257_010 Hb_005170_010 Hb_005170_010 Hb_010003_010--Hb_005170_010 Hb_000889_100--Hb_051257_010 Hb_017014_010 Hb_017014_010 Hb_000889_100--Hb_017014_010 Hb_000035_220 Hb_000035_220 Hb_000889_100--Hb_000035_220 Hb_164010_050 Hb_164010_050 Hb_000889_100--Hb_164010_050 Hb_000622_350 Hb_000622_350 Hb_000889_100--Hb_000622_350 Hb_000889_100--Hb_000094_290 Hb_000173_060 Hb_000173_060 Hb_000094_290--Hb_000173_060 Hb_000300_090 Hb_000300_090 Hb_000094_290--Hb_000300_090 Hb_000094_290--Hb_000622_350 Hb_011926_040 Hb_011926_040 Hb_000094_290--Hb_011926_040 Hb_000077_290--Hb_005170_010 Hb_000077_290--Hb_000230_180 Hb_004525_040 Hb_004525_040 Hb_000077_290--Hb_004525_040 Hb_012194_060 Hb_012194_060 Hb_000077_290--Hb_012194_060 Hb_000035_330 Hb_000035_330 Hb_000077_290--Hb_000035_330 Hb_000077_290--Hb_000889_100 Hb_002611_020 Hb_002611_020 Hb_000230_180--Hb_002611_020 Hb_000230_180--Hb_005170_010 Hb_075764_010 Hb_075764_010 Hb_000230_180--Hb_075764_010 Hb_086639_080 Hb_086639_080 Hb_000230_180--Hb_086639_080 Hb_002498_050 Hb_002498_050 Hb_000230_180--Hb_002498_050 Hb_000696_010 Hb_000696_010 Hb_000230_180--Hb_000696_010 Hb_051257_010--Hb_164010_050 Hb_000684_260 Hb_000684_260 Hb_051257_010--Hb_000684_260 Hb_134429_010 Hb_134429_010 Hb_051257_010--Hb_134429_010 Hb_051257_010--Hb_000094_290 Hb_005170_010--Hb_000035_330 Hb_005170_010--Hb_086639_080 Hb_005170_010--Hb_002611_020 Hb_002226_080 Hb_002226_080 Hb_005170_010--Hb_002226_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.57659 2.08092 5.68268 14.193 4.12457 9.25334
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.13022 1.42098 2.60975 3.54997 6.27867

CAGE analysis