Hb_048702_010

Information

Type -
Description -
Location Contig48702: 347-1113
Sequence    

Annotation

kegg
ID rcu:RCOM_0923260
description hypothetical protein
nr
ID XP_012068140.1
description PREDICTED: ER membrane protein complex subunit 7 homolog isoform X1 [Jatropha curcas]
swissprot
ID Q8VY97
description ER membrane protein complex subunit 7 homolog OS=Arabidopsis thaliana GN=At4g32130 PE=2 SV=1
trembl
ID A0A067LNU9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08517 PE=4 SV=1
Gene Ontology
ID GO:0004467
description er membrane protein complex subunit 7 homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45050: 777-1030
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_048702_010 0.0 - - PREDICTED: ER membrane protein complex subunit 7 homolog isoform X1 [Jatropha curcas]
2 Hb_006634_110 0.1022030405 - - BnaC04g40780D [Brassica napus]
3 Hb_100137_010 0.1275119634 - - hypothetical protein JCGZ_17848 [Jatropha curcas]
4 Hb_002611_030 0.1347267388 - - PREDICTED: alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase [Jatropha curcas]
5 Hb_017014_010 0.140106602 - - PREDICTED: syntaxin-132-like isoform X1 [Jatropha curcas]
6 Hb_122636_010 0.1531455299 - - dienelactone hydrolase family protein [Populus trichocarpa]
7 Hb_010577_010 0.160260349 - - PREDICTED: 2-dehydro-3-deoxyphosphooctonate aldolase-like [Populus euphratica]
8 Hb_002129_020 0.1605157846 - - PREDICTED: probable beta-1,4-xylosyltransferase IRX14 [Jatropha curcas]
9 Hb_002157_270 0.1629852057 - - PREDICTED: transmembrane protein 87B [Jatropha curcas]
10 Hb_000950_030 0.1660895901 - - PREDICTED: probable sugar phosphate/phosphate translocator At3g10290 [Nelumbo nucifera]
11 Hb_001894_070 0.1693841766 - - PREDICTED: probable inactive poly [ADP-ribose] polymerase SRO2 isoform X1 [Jatropha curcas]
12 Hb_003071_070 0.1704150679 - - sucrose synthase 3 [Hevea brasiliensis]
13 Hb_000077_290 0.1705585316 - - conserved hypothetical protein [Ricinus communis]
14 Hb_007574_070 0.1710808149 - - fatty acid desaturase, putative [Ricinus communis]
15 Hb_009674_010 0.1722416167 - - AAEL007687-PA [Aedes aegypti]
16 Hb_010984_040 0.1735545724 - - hypothetical protein M569_17286, partial [Genlisea aurea]
17 Hb_184541_010 0.1749580398 - - PREDICTED: selT-like protein [Jatropha curcas]
18 Hb_007456_020 0.1779175833 - - unknown [Lotus japonicus]
19 Hb_001059_140 0.1837252501 - - hypothetical protein POPTR_0004s03390g [Populus trichocarpa]
20 Hb_002760_050 0.1838190302 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_048702_010 Hb_048702_010 Hb_006634_110 Hb_006634_110 Hb_048702_010--Hb_006634_110 Hb_100137_010 Hb_100137_010 Hb_048702_010--Hb_100137_010 Hb_002611_030 Hb_002611_030 Hb_048702_010--Hb_002611_030 Hb_017014_010 Hb_017014_010 Hb_048702_010--Hb_017014_010 Hb_122636_010 Hb_122636_010 Hb_048702_010--Hb_122636_010 Hb_010577_010 Hb_010577_010 Hb_048702_010--Hb_010577_010 Hb_006634_110--Hb_122636_010 Hb_006634_110--Hb_100137_010 Hb_006634_110--Hb_010577_010 Hb_053709_040 Hb_053709_040 Hb_006634_110--Hb_053709_040 Hb_000671_130 Hb_000671_130 Hb_006634_110--Hb_000671_130 Hb_004466_060 Hb_004466_060 Hb_100137_010--Hb_004466_060 Hb_100137_010--Hb_002611_030 Hb_000077_290 Hb_000077_290 Hb_100137_010--Hb_000077_290 Hb_100137_010--Hb_122636_010 Hb_001217_010 Hb_001217_010 Hb_100137_010--Hb_001217_010 Hb_002611_030--Hb_017014_010 Hb_002611_030--Hb_004466_060 Hb_009083_030 Hb_009083_030 Hb_002611_030--Hb_009083_030 Hb_010003_010 Hb_010003_010 Hb_002611_030--Hb_010003_010 Hb_000889_100 Hb_000889_100 Hb_017014_010--Hb_000889_100 Hb_017014_010--Hb_010003_010 Hb_017014_010--Hb_100137_010 Hb_017014_010--Hb_000077_290 Hb_122636_010--Hb_000671_130 Hb_002660_110 Hb_002660_110 Hb_122636_010--Hb_002660_110 Hb_003207_150 Hb_003207_150 Hb_122636_010--Hb_003207_150 Hb_122636_010--Hb_001217_010 Hb_091349_010 Hb_091349_010 Hb_010577_010--Hb_091349_010 Hb_001969_020 Hb_001969_020 Hb_010577_010--Hb_001969_020 Hb_000683_100 Hb_000683_100 Hb_010577_010--Hb_000683_100 Hb_010577_010--Hb_122636_010 Hb_010931_140 Hb_010931_140 Hb_010577_010--Hb_010931_140 Hb_007574_070 Hb_007574_070 Hb_010577_010--Hb_007574_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.65081 4.22029 10.8303 87.291 5.78828 25.1359
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.89967 5.42368 7.97078 13.4333 28.0246

CAGE analysis