Hb_053709_040

Information

Type -
Description -
Location Contig53709: 11931-14960
Sequence    

Annotation

kegg
ID mdm:103418811
description actin
nr
ID AFN53639.1
description putative actin-97 protein [Linum usitatissimum]
swissprot
ID O81221
description Actin OS=Gossypium hirsutum PE=3 SV=1
trembl
ID I6YM48
description Putative actin-97 protein OS=Linum usitatissimum PE=3 SV=1
Gene Ontology
ID GO:0005524
description actin

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47605: 11910-15236 , PASA_asmbl_47606: 14879-15113
cDNA
(Sanger)
(ID:Location)		 008_H17.ab1: 13255-15236

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_053709_040 0.0 - - putative actin-97 protein [Linum usitatissimum]
2 Hb_003207_150 0.1056169173 - - PREDICTED: SPX domain-containing membrane protein At4g22990-like [Jatropha curcas]
3 Hb_001366_170 0.1143662582 - - PREDICTED: uncharacterized protein C594.04c [Jatropha curcas]
4 Hb_034726_010 0.1254937853 - - PREDICTED: chaperone protein dnaJ 1, mitochondrial isoform X2 [Jatropha curcas]
5 Hb_008185_020 0.1310488309 - - RING-H2 finger protein ATL3J, putative [Ricinus communis]
6 Hb_007632_100 0.1328524292 transcription factor TF Family: NF-YB ccaat-binding transcription factor subunit A, putative [Ricinus communis]
7 Hb_000177_110 0.1441458667 - - PREDICTED: uncharacterized protein LOC105642063 [Jatropha curcas]
8 Hb_007483_060 0.1501017358 desease resistance Gene Name: ABC_membrane multidrug resistance protein 1, 2, putative [Ricinus communis]
9 Hb_002490_030 0.1504638296 - - conserved hypothetical protein [Ricinus communis]
10 Hb_066778_010 0.1518903678 - - -
11 Hb_006634_110 0.1536388007 - - BnaC04g40780D [Brassica napus]
12 Hb_054865_160 0.1584224311 - - PREDICTED: D-arabinono-1,4-lactone oxidase-like [Jatropha curcas]
13 Hb_122636_010 0.1601424531 - - dienelactone hydrolase family protein [Populus trichocarpa]
14 Hb_000098_170 0.1641830961 - - hypothetical protein JCGZ_06491 [Jatropha curcas]
15 Hb_118939_010 0.1648885868 - - protein binding protein, putative [Ricinus communis]
16 Hb_003058_230 0.1655181425 - - copper ion binding protein, putative [Ricinus communis]
17 Hb_000816_190 0.1702030468 - - conserved hypothetical protein [Ricinus communis]
18 Hb_184541_010 0.170690681 - - PREDICTED: selT-like protein [Jatropha curcas]
19 Hb_002316_080 0.1717125898 - - PREDICTED: RING-H2 finger protein ATL46-like [Populus euphratica]
20 Hb_002900_100 0.1717211168 - - PREDICTED: L-type lectin-domain containing receptor kinase S.4-like [Jatropha curcas]

Gene co-expression network

sample Hb_053709_040 Hb_053709_040 Hb_003207_150 Hb_003207_150 Hb_053709_040--Hb_003207_150 Hb_001366_170 Hb_001366_170 Hb_053709_040--Hb_001366_170 Hb_034726_010 Hb_034726_010 Hb_053709_040--Hb_034726_010 Hb_008185_020 Hb_008185_020 Hb_053709_040--Hb_008185_020 Hb_007632_100 Hb_007632_100 Hb_053709_040--Hb_007632_100 Hb_000177_110 Hb_000177_110 Hb_053709_040--Hb_000177_110 Hb_003207_150--Hb_000177_110 Hb_003207_150--Hb_034726_010 Hb_003207_150--Hb_001366_170 Hb_000671_130 Hb_000671_130 Hb_003207_150--Hb_000671_130 Hb_122636_010 Hb_122636_010 Hb_003207_150--Hb_122636_010 Hb_001902_200 Hb_001902_200 Hb_001366_170--Hb_001902_200 Hb_002490_030 Hb_002490_030 Hb_001366_170--Hb_002490_030 Hb_006351_020 Hb_006351_020 Hb_001366_170--Hb_006351_020 Hb_004032_210 Hb_004032_210 Hb_001366_170--Hb_004032_210 Hb_034726_010--Hb_000177_110 Hb_001369_630 Hb_001369_630 Hb_034726_010--Hb_001369_630 Hb_001102_160 Hb_001102_160 Hb_034726_010--Hb_001102_160 Hb_034726_010--Hb_001366_170 Hb_184541_010 Hb_184541_010 Hb_008185_020--Hb_184541_010 Hb_001247_030 Hb_001247_030 Hb_008185_020--Hb_001247_030 Hb_004125_070 Hb_004125_070 Hb_008185_020--Hb_004125_070 Hb_011918_010 Hb_011918_010 Hb_008185_020--Hb_011918_010 Hb_030992_010 Hb_030992_010 Hb_008185_020--Hb_030992_010 Hb_024074_020 Hb_024074_020 Hb_007632_100--Hb_024074_020 Hb_007632_100--Hb_003207_150 Hb_007632_100--Hb_001366_170 Hb_003058_230 Hb_003058_230 Hb_007632_100--Hb_003058_230 Hb_002660_110 Hb_002660_110 Hb_007632_100--Hb_002660_110 Hb_000424_030 Hb_000424_030 Hb_000177_110--Hb_000424_030 Hb_007483_060 Hb_007483_060 Hb_000177_110--Hb_007483_060 Hb_002217_500 Hb_002217_500 Hb_000177_110--Hb_002217_500 Hb_000177_110--Hb_000671_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.054 7.26733 32.2646 109.774 5.9803 12.2038
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.6251 8.72122 7.47442 7.29753 19.885

CAGE analysis