Hb_003058_230

Information

Type -
Description -
Location Contig3058: 204816-206896
Sequence    

Annotation

kegg
ID rcu:RCOM_0786660
description copper ion binding protein, putative
nr
ID XP_002523254.1
description copper ion binding protein, putative [Ricinus communis]
swissprot
ID P80728
description Mavicyanin OS=Cucurbita pepo PE=1 SV=1
trembl
ID B9SB85
description Copper ion binding protein, putative OS=Ricinus communis GN=RCOM_0786660 PE=4 SV=1
Gene Ontology
ID GO:0009055
description blue copper

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32339: 204703-206867 , PASA_asmbl_32341: 206221-206520 , PASA_asmbl_32342: 205925-206157
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003058_230 0.0 - - copper ion binding protein, putative [Ricinus communis]
2 Hb_054865_160 0.1475093336 - - PREDICTED: D-arabinono-1,4-lactone oxidase-like [Jatropha curcas]
3 Hb_007632_100 0.1578097859 transcription factor TF Family: NF-YB ccaat-binding transcription factor subunit A, putative [Ricinus communis]
4 Hb_008185_020 0.1624633401 - - RING-H2 finger protein ATL3J, putative [Ricinus communis]
5 Hb_053709_040 0.1655181425 - - putative actin-97 protein [Linum usitatissimum]
6 Hb_001004_080 0.1838530797 - - hypothetical protein POPTR_0014s14130g [Populus trichocarpa]
7 Hb_001584_130 0.1894745826 - - PREDICTED: uncharacterized protein LOC105647410 [Jatropha curcas]
8 Hb_007483_060 0.1981177955 desease resistance Gene Name: ABC_membrane multidrug resistance protein 1, 2, putative [Ricinus communis]
9 Hb_017002_010 0.2036079403 - - PREDICTED: expansin-A15-like [Jatropha curcas]
10 Hb_006634_110 0.2057833741 - - BnaC04g40780D [Brassica napus]
11 Hb_003207_150 0.2078999869 - - PREDICTED: SPX domain-containing membrane protein At4g22990-like [Jatropha curcas]
12 Hb_034507_040 0.2163952027 - - peptide transporter, putative [Ricinus communis]
13 Hb_001366_170 0.2186300046 - - PREDICTED: uncharacterized protein C594.04c [Jatropha curcas]
14 Hb_003875_010 0.219706141 - - hypothetical protein POPTR_0002s14490g, partial [Populus trichocarpa]
15 Hb_122636_010 0.2222424086 - - dienelactone hydrolase family protein [Populus trichocarpa]
16 Hb_000816_190 0.2241949099 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000177_110 0.2248039036 - - PREDICTED: uncharacterized protein LOC105642063 [Jatropha curcas]
18 Hb_012339_010 0.2282507856 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000300_480 0.2309585296 - - hypothetical protein RCOM_1321910 [Ricinus communis]
20 Hb_032143_020 0.2329137357 - - hypothetical protein POPTR_0009s06310g [Populus trichocarpa]

Gene co-expression network

sample Hb_003058_230 Hb_003058_230 Hb_054865_160 Hb_054865_160 Hb_003058_230--Hb_054865_160 Hb_007632_100 Hb_007632_100 Hb_003058_230--Hb_007632_100 Hb_008185_020 Hb_008185_020 Hb_003058_230--Hb_008185_020 Hb_053709_040 Hb_053709_040 Hb_003058_230--Hb_053709_040 Hb_001004_080 Hb_001004_080 Hb_003058_230--Hb_001004_080 Hb_001584_130 Hb_001584_130 Hb_003058_230--Hb_001584_130 Hb_054865_160--Hb_053709_040 Hb_054865_160--Hb_008185_020 Hb_000816_190 Hb_000816_190 Hb_054865_160--Hb_000816_190 Hb_007575_090 Hb_007575_090 Hb_054865_160--Hb_007575_090 Hb_011918_010 Hb_011918_010 Hb_054865_160--Hb_011918_010 Hb_007632_100--Hb_053709_040 Hb_024074_020 Hb_024074_020 Hb_007632_100--Hb_024074_020 Hb_003207_150 Hb_003207_150 Hb_007632_100--Hb_003207_150 Hb_001366_170 Hb_001366_170 Hb_007632_100--Hb_001366_170 Hb_002660_110 Hb_002660_110 Hb_007632_100--Hb_002660_110 Hb_184541_010 Hb_184541_010 Hb_008185_020--Hb_184541_010 Hb_008185_020--Hb_053709_040 Hb_001247_030 Hb_001247_030 Hb_008185_020--Hb_001247_030 Hb_004125_070 Hb_004125_070 Hb_008185_020--Hb_004125_070 Hb_008185_020--Hb_011918_010 Hb_030992_010 Hb_030992_010 Hb_008185_020--Hb_030992_010 Hb_053709_040--Hb_003207_150 Hb_053709_040--Hb_001366_170 Hb_034726_010 Hb_034726_010 Hb_053709_040--Hb_034726_010 Hb_000177_110 Hb_000177_110 Hb_053709_040--Hb_000177_110 Hb_001004_080--Hb_001584_130 Hb_012339_010 Hb_012339_010 Hb_001004_080--Hb_012339_010 Hb_009913_040 Hb_009913_040 Hb_001004_080--Hb_009913_040 Hb_003994_300 Hb_003994_300 Hb_001004_080--Hb_003994_300 Hb_000445_150 Hb_000445_150 Hb_001004_080--Hb_000445_150 Hb_011310_040 Hb_011310_040 Hb_001004_080--Hb_011310_040 Hb_001584_130--Hb_000445_150 Hb_003647_020 Hb_003647_020 Hb_001584_130--Hb_003647_020 Hb_001584_130--Hb_012339_010 Hb_001049_150 Hb_001049_150 Hb_001584_130--Hb_001049_150 Hb_001584_130--Hb_003994_300
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.90424 5.45069 48.3792 193.654 30.7557 17.6195
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
15.4402 21.2467 9.69856 1.10273 28.8785

CAGE analysis