Hb_054865_160

Information

Type -
Description -
Location Contig54865: 134834-138130
Sequence    

Annotation

kegg
ID pop:POPTR_0002s17900g
description POPTRDRAFT_799138; FAD-binding domain-containing family protein
nr
ID XP_012083815.1
description PREDICTED: D-arabinono-1,4-lactone oxidase-like [Jatropha curcas]
swissprot
ID O81032
description Probable L-gulonolactone oxidase 6 OS=Arabidopsis thaliana GN=GULLO6 PE=3 SV=1
trembl
ID B9GRQ1
description FAD-binding domain-containing family protein OS=Populus trichocarpa GN=POPTR_0002s17900g PE=4 SV=1
Gene Ontology
ID GO:0016020
description l-gulonolactone oxidase-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48102: 135668-135984
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_054865_160 0.0 - - PREDICTED: D-arabinono-1,4-lactone oxidase-like [Jatropha curcas]
2 Hb_003058_230 0.1475093336 - - copper ion binding protein, putative [Ricinus communis]
3 Hb_053709_040 0.1584224311 - - putative actin-97 protein [Linum usitatissimum]
4 Hb_008185_020 0.1631508921 - - RING-H2 finger protein ATL3J, putative [Ricinus communis]
5 Hb_000816_190 0.1674070866 - - conserved hypothetical protein [Ricinus communis]
6 Hb_007575_090 0.181967401 - - putative. proteolipid subunit of vacuolar H+ ATPase, partial [Zea mays]
7 Hb_011918_010 0.1857376693 - - hypothetical protein glysoja_041948 [Glycine soja]
8 Hb_034507_040 0.185872492 - - peptide transporter, putative [Ricinus communis]
9 Hb_007632_100 0.1866232465 transcription factor TF Family: NF-YB ccaat-binding transcription factor subunit A, putative [Ricinus communis]
10 Hb_007483_060 0.1878123221 desease resistance Gene Name: ABC_membrane multidrug resistance protein 1, 2, putative [Ricinus communis]
11 Hb_002490_030 0.192418218 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000805_140 0.1936464723 transcription factor TF Family: GRAS Chitin-inducible gibberellin-responsive protein, putative [Ricinus communis]
13 Hb_002900_100 0.1964378173 - - PREDICTED: L-type lectin-domain containing receptor kinase S.4-like [Jatropha curcas]
14 Hb_184541_010 0.1998369672 - - PREDICTED: selT-like protein [Jatropha curcas]
15 Hb_000311_040 0.2034531382 - - PREDICTED: S-formylglutathione hydrolase [Jatropha curcas]
16 Hb_066514_010 0.2048880941 - - hypothetical protein RCOM_0204720 [Ricinus communis]
17 Hb_003207_150 0.2069499459 - - PREDICTED: SPX domain-containing membrane protein At4g22990-like [Jatropha curcas]
18 Hb_001486_050 0.2079054864 - - PREDICTED: arabinogalactan peptide 13-like [Jatropha curcas]
19 Hb_000977_200 0.2102565034 - - PREDICTED: acyl-[acyl-carrier-protein] desaturase, chloroplastic-like [Jatropha curcas]
20 Hb_002243_050 0.2103049565 - - PREDICTED: ion channel DMI1-like isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_054865_160 Hb_054865_160 Hb_003058_230 Hb_003058_230 Hb_054865_160--Hb_003058_230 Hb_053709_040 Hb_053709_040 Hb_054865_160--Hb_053709_040 Hb_008185_020 Hb_008185_020 Hb_054865_160--Hb_008185_020 Hb_000816_190 Hb_000816_190 Hb_054865_160--Hb_000816_190 Hb_007575_090 Hb_007575_090 Hb_054865_160--Hb_007575_090 Hb_011918_010 Hb_011918_010 Hb_054865_160--Hb_011918_010 Hb_007632_100 Hb_007632_100 Hb_003058_230--Hb_007632_100 Hb_003058_230--Hb_008185_020 Hb_003058_230--Hb_053709_040 Hb_001004_080 Hb_001004_080 Hb_003058_230--Hb_001004_080 Hb_001584_130 Hb_001584_130 Hb_003058_230--Hb_001584_130 Hb_003207_150 Hb_003207_150 Hb_053709_040--Hb_003207_150 Hb_001366_170 Hb_001366_170 Hb_053709_040--Hb_001366_170 Hb_034726_010 Hb_034726_010 Hb_053709_040--Hb_034726_010 Hb_053709_040--Hb_008185_020 Hb_053709_040--Hb_007632_100 Hb_000177_110 Hb_000177_110 Hb_053709_040--Hb_000177_110 Hb_184541_010 Hb_184541_010 Hb_008185_020--Hb_184541_010 Hb_001247_030 Hb_001247_030 Hb_008185_020--Hb_001247_030 Hb_004125_070 Hb_004125_070 Hb_008185_020--Hb_004125_070 Hb_008185_020--Hb_011918_010 Hb_030992_010 Hb_030992_010 Hb_008185_020--Hb_030992_010 Hb_002490_030 Hb_002490_030 Hb_000816_190--Hb_002490_030 Hb_002900_100 Hb_002900_100 Hb_000816_190--Hb_002900_100 Hb_066514_010 Hb_066514_010 Hb_000816_190--Hb_066514_010 Hb_008119_030 Hb_008119_030 Hb_000816_190--Hb_008119_030 Hb_000816_190--Hb_001366_170 Hb_000816_190--Hb_011918_010 Hb_007575_090--Hb_011918_010 Hb_007741_090 Hb_007741_090 Hb_007575_090--Hb_007741_090 Hb_007575_090--Hb_066514_010 Hb_007575_090--Hb_002900_100 Hb_000302_110 Hb_000302_110 Hb_007575_090--Hb_000302_110 Hb_004117_330 Hb_004117_330 Hb_007575_090--Hb_004117_330 Hb_011918_010--Hb_066514_010 Hb_011918_010--Hb_184541_010 Hb_011918_010--Hb_002900_100 Hb_011918_010--Hb_004125_070 Hb_011918_010--Hb_002490_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0829013 0.144605 0.308861 1.65332 0.131495 0.125602
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0785036 0.0823541 0.116675 0.00820226 0.129983

CAGE analysis