Hb_000816_190

Information

Type -
Description -
Location Contig816: 206226-209184
Sequence    

Annotation

kegg
ID rcu:RCOM_0689280
description hypothetical protein
nr
ID XP_002520839.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q5XVC7
description WEB family protein At2g40480 OS=Arabidopsis thaliana GN=At2g40480 PE=2 SV=1
trembl
ID B9S4C0
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0689280 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59420: 206445-209238
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000816_190 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_002490_030 0.1337783717 - - conserved hypothetical protein [Ricinus communis]
3 Hb_002900_100 0.1391510681 - - PREDICTED: L-type lectin-domain containing receptor kinase S.4-like [Jatropha curcas]
4 Hb_066514_010 0.1532061282 - - hypothetical protein RCOM_0204720 [Ricinus communis]
5 Hb_008119_030 0.1633174509 - - PREDICTED: peroxidase 63-like [Jatropha curcas]
6 Hb_001366_170 0.1664444045 - - PREDICTED: uncharacterized protein C594.04c [Jatropha curcas]
7 Hb_011918_010 0.1669434572 - - hypothetical protein glysoja_041948 [Glycine soja]
8 Hb_054865_160 0.1674070866 - - PREDICTED: D-arabinono-1,4-lactone oxidase-like [Jatropha curcas]
9 Hb_053709_040 0.1702030468 - - putative actin-97 protein [Linum usitatissimum]
10 Hb_000311_040 0.1765002389 - - PREDICTED: S-formylglutathione hydrolase [Jatropha curcas]
11 Hb_001195_410 0.1795008526 - - PREDICTED: deoxyuridine 5'-triphosphate nucleotidohydrolase [Jatropha curcas]
12 Hb_003605_040 0.1809808542 - - PREDICTED: somatic embryogenesis receptor kinase 2 isoform X1 [Jatropha curcas]
13 Hb_008185_020 0.181525331 - - RING-H2 finger protein ATL3J, putative [Ricinus communis]
14 Hb_002164_010 0.1824307178 - - Stellacyanin, putative [Ricinus communis]
15 Hb_002272_200 0.1832496672 - - PREDICTED: GDSL esterase/lipase At1g54790 isoform X1 [Jatropha curcas]
16 Hb_002675_090 0.1835008464 - - conserved hypothetical protein [Ricinus communis]
17 Hb_007575_090 0.1838432299 - - putative. proteolipid subunit of vacuolar H+ ATPase, partial [Zea mays]
18 Hb_003875_010 0.1853542903 - - hypothetical protein POPTR_0002s14490g, partial [Populus trichocarpa]
19 Hb_003207_150 0.1875535598 - - PREDICTED: SPX domain-containing membrane protein At4g22990-like [Jatropha curcas]
20 Hb_007632_100 0.1875907644 transcription factor TF Family: NF-YB ccaat-binding transcription factor subunit A, putative [Ricinus communis]

Gene co-expression network

sample Hb_000816_190 Hb_000816_190 Hb_002490_030 Hb_002490_030 Hb_000816_190--Hb_002490_030 Hb_002900_100 Hb_002900_100 Hb_000816_190--Hb_002900_100 Hb_066514_010 Hb_066514_010 Hb_000816_190--Hb_066514_010 Hb_008119_030 Hb_008119_030 Hb_000816_190--Hb_008119_030 Hb_001366_170 Hb_001366_170 Hb_000816_190--Hb_001366_170 Hb_011918_010 Hb_011918_010 Hb_000816_190--Hb_011918_010 Hb_002272_200 Hb_002272_200 Hb_002490_030--Hb_002272_200 Hb_002490_030--Hb_002900_100 Hb_124951_020 Hb_124951_020 Hb_002490_030--Hb_124951_020 Hb_002490_030--Hb_001366_170 Hb_002490_030--Hb_066514_010 Hb_002900_100--Hb_066514_010 Hb_002675_090 Hb_002675_090 Hb_002900_100--Hb_002675_090 Hb_002900_100--Hb_011918_010 Hb_006907_050 Hb_006907_050 Hb_002900_100--Hb_006907_050 Hb_066514_010--Hb_011918_010 Hb_007441_090 Hb_007441_090 Hb_066514_010--Hb_007441_090 Hb_118507_010 Hb_118507_010 Hb_066514_010--Hb_118507_010 Hb_000302_100 Hb_000302_100 Hb_066514_010--Hb_000302_100 Hb_003605_040 Hb_003605_040 Hb_008119_030--Hb_003605_040 Hb_009808_010 Hb_009808_010 Hb_008119_030--Hb_009808_010 Hb_002026_020 Hb_002026_020 Hb_008119_030--Hb_002026_020 Hb_009222_070 Hb_009222_070 Hb_008119_030--Hb_009222_070 Hb_018133_100 Hb_018133_100 Hb_008119_030--Hb_018133_100 Hb_071781_010 Hb_071781_010 Hb_008119_030--Hb_071781_010 Hb_053709_040 Hb_053709_040 Hb_001366_170--Hb_053709_040 Hb_001902_200 Hb_001902_200 Hb_001366_170--Hb_001902_200 Hb_003207_150 Hb_003207_150 Hb_001366_170--Hb_003207_150 Hb_006351_020 Hb_006351_020 Hb_001366_170--Hb_006351_020 Hb_004032_210 Hb_004032_210 Hb_001366_170--Hb_004032_210 Hb_007575_090 Hb_007575_090 Hb_011918_010--Hb_007575_090 Hb_184541_010 Hb_184541_010 Hb_011918_010--Hb_184541_010 Hb_004125_070 Hb_004125_070 Hb_011918_010--Hb_004125_070 Hb_011918_010--Hb_002490_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.37947 7.82113 21.0579 63.2107 5.02682 3.95862
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.29303 2.56002 3.13387 4.59457 3.49298

CAGE analysis