Hb_124951_020

Information

Type -
Description -
Location Contig124951: 1342-1945
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_124951_020 0.0 - - -
2 Hb_002490_030 0.1259566314 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000540_160 0.1600636784 - - PREDICTED: mitogen-activated protein kinase homolog NTF6 [Jatropha curcas]
4 Hb_002965_060 0.1741305448 - - Protein COBRA precursor, putative [Ricinus communis]
5 Hb_003728_110 0.1822635167 - - PREDICTED: calmodulin-like protein 3 [Populus euphratica]
6 Hb_007163_050 0.1839000985 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA9 [Jatropha curcas]
7 Hb_030685_010 0.1847580181 - - -
8 Hb_002900_100 0.1910704877 - - PREDICTED: L-type lectin-domain containing receptor kinase S.4-like [Jatropha curcas]
9 Hb_000163_040 0.1942066037 - - PREDICTED: indole-3-acetic acid-induced protein ARG2-like [Jatropha curcas]
10 Hb_002272_200 0.1944918909 - - PREDICTED: GDSL esterase/lipase At1g54790 isoform X1 [Jatropha curcas]
11 Hb_002900_180 0.196390578 transcription factor TF Family: LIM LIM1 [Hevea brasiliensis]
12 Hb_002893_030 0.1991294797 - - PREDICTED: 3-ketoacyl-CoA synthase 11-like [Populus euphratica]
13 Hb_002749_040 0.1993920043 - - Ribosomal protein L6 family protein [Theobroma cacao]
14 Hb_006907_050 0.2035339911 - - unnamed protein product [Coffea canephora]
15 Hb_001366_170 0.204829128 - - PREDICTED: uncharacterized protein C594.04c [Jatropha curcas]
16 Hb_002026_050 0.2082892751 - - PREDICTED: BTB/POZ domain-containing protein At5g41330 [Jatropha curcas]
17 Hb_003055_080 0.20838964 - - PREDICTED: protein STRUBBELIG-RECEPTOR FAMILY 3 isoform X1 [Jatropha curcas]
18 Hb_000028_490 0.2089225566 - - calmodulin-like protein 6a [Populus trichocarpa]
19 Hb_004109_210 0.2094931134 - - PREDICTED: 9-cis-epoxycarotenoid dioxygenase NCED3, chloroplastic-like [Jatropha curcas]
20 Hb_003992_280 0.210202168 - - PREDICTED: uncharacterized protein LOC105117987 [Populus euphratica]

Gene co-expression network

sample Hb_124951_020 Hb_124951_020 Hb_002490_030 Hb_002490_030 Hb_124951_020--Hb_002490_030 Hb_000540_160 Hb_000540_160 Hb_124951_020--Hb_000540_160 Hb_002965_060 Hb_002965_060 Hb_124951_020--Hb_002965_060 Hb_003728_110 Hb_003728_110 Hb_124951_020--Hb_003728_110 Hb_007163_050 Hb_007163_050 Hb_124951_020--Hb_007163_050 Hb_030685_010 Hb_030685_010 Hb_124951_020--Hb_030685_010 Hb_002272_200 Hb_002272_200 Hb_002490_030--Hb_002272_200 Hb_002900_100 Hb_002900_100 Hb_002490_030--Hb_002900_100 Hb_000816_190 Hb_000816_190 Hb_002490_030--Hb_000816_190 Hb_001366_170 Hb_001366_170 Hb_002490_030--Hb_001366_170 Hb_066514_010 Hb_066514_010 Hb_002490_030--Hb_066514_010 Hb_002900_180 Hb_002900_180 Hb_000540_160--Hb_002900_180 Hb_000540_160--Hb_003728_110 Hb_000028_490 Hb_000028_490 Hb_000540_160--Hb_000028_490 Hb_000540_160--Hb_002490_030 Hb_004147_070 Hb_004147_070 Hb_000540_160--Hb_004147_070 Hb_000300_190 Hb_000300_190 Hb_002965_060--Hb_000300_190 Hb_003055_080 Hb_003055_080 Hb_002965_060--Hb_003055_080 Hb_003992_280 Hb_003992_280 Hb_002965_060--Hb_003992_280 Hb_006120_130 Hb_006120_130 Hb_002965_060--Hb_006120_130 Hb_000375_260 Hb_000375_260 Hb_002965_060--Hb_000375_260 Hb_002965_060--Hb_003728_110 Hb_003728_110--Hb_003992_280 Hb_002292_080 Hb_002292_080 Hb_003728_110--Hb_002292_080 Hb_003606_050 Hb_003606_050 Hb_003728_110--Hb_003606_050 Hb_003935_040 Hb_003935_040 Hb_003728_110--Hb_003935_040 Hb_003728_110--Hb_030685_010 Hb_003055_090 Hb_003055_090 Hb_003728_110--Hb_003055_090 Hb_188281_010 Hb_188281_010 Hb_007163_050--Hb_188281_010 Hb_007749_020 Hb_007749_020 Hb_007163_050--Hb_007749_020 Hb_002026_050 Hb_002026_050 Hb_007163_050--Hb_002026_050 Hb_000163_040 Hb_000163_040 Hb_007163_050--Hb_000163_040 Hb_000563_140 Hb_000563_140 Hb_007163_050--Hb_000563_140 Hb_001514_250 Hb_001514_250 Hb_007163_050--Hb_001514_250 Hb_003540_120 Hb_003540_120 Hb_030685_010--Hb_003540_120 Hb_000093_090 Hb_000093_090 Hb_030685_010--Hb_000093_090 Hb_001188_050 Hb_001188_050 Hb_030685_010--Hb_001188_050 Hb_030685_010--Hb_003055_080 Hb_002749_040 Hb_002749_040 Hb_030685_010--Hb_002749_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.54122 10.0549 24.0049 51.2157 0.281502 4.03084
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.22128 1.45284 4.33672 6.58812 2.65536

CAGE analysis