Hb_001366_170

Information

Type -
Description -
Location Contig1366: 133183-134931
Sequence    

Annotation

kegg
ID rcu:RCOM_1341620
description hypothetical protein
nr
ID XP_012083067.1
description PREDICTED: uncharacterized protein C594.04c [Jatropha curcas]
swissprot
ID O74507
description Uncharacterized protein C594.04c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC594.04c PE=3 SV=2
trembl
ID A0A067JWN3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14152 PE=4 SV=1
Gene Ontology
ID GO:0005737
description PREDICTED: uncharacterized protein C594.04c

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10080: 133203-134768
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001366_170 0.0 - - PREDICTED: uncharacterized protein C594.04c [Jatropha curcas]
2 Hb_053709_040 0.1143662582 - - putative actin-97 protein [Linum usitatissimum]
3 Hb_001902_200 0.1194194379 - - PREDICTED: tubulin beta-1 chain [Eucalyptus grandis]
4 Hb_003207_150 0.1259422669 - - PREDICTED: SPX domain-containing membrane protein At4g22990-like [Jatropha curcas]
5 Hb_002490_030 0.14037996 - - conserved hypothetical protein [Ricinus communis]
6 Hb_006351_020 0.1442818185 - - PREDICTED: L-type lectin-domain containing receptor kinase S.4-like [Jatropha curcas]
7 Hb_004032_210 0.1459234196 - - conserved hypothetical protein [Ricinus communis]
8 Hb_004147_070 0.1464510874 - - PREDICTED: probable rhamnogalacturonate lyase B [Jatropha curcas]
9 Hb_034726_010 0.1482132311 - - PREDICTED: chaperone protein dnaJ 1, mitochondrial isoform X2 [Jatropha curcas]
10 Hb_000023_110 0.1531935978 - - PREDICTED: probable methyltransferase PMT21 [Jatropha curcas]
11 Hb_031284_030 0.1555561326 - - conserved hypothetical protein [Ricinus communis]
12 Hb_007632_100 0.156295605 transcription factor TF Family: NF-YB ccaat-binding transcription factor subunit A, putative [Ricinus communis]
13 Hb_000581_030 0.1566586298 - - conserved hypothetical protein [Ricinus communis]
14 Hb_118939_010 0.1589853221 - - protein binding protein, putative [Ricinus communis]
15 Hb_000152_190 0.1593339272 - - PREDICTED: K(+) efflux antiporter 5 [Jatropha curcas]
16 Hb_003813_060 0.1598212207 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000177_110 0.1628703093 - - PREDICTED: uncharacterized protein LOC105642063 [Jatropha curcas]
18 Hb_017439_010 0.1630458393 - - putative actin-97 protein [Linum usitatissimum]
19 Hb_002235_060 0.1654198244 - - plastocyanin-like domain-containing family protein [Populus trichocarpa]
20 Hb_001369_630 0.1658443778 - - PREDICTED: UDP-glucuronate 4-epimerase 3-like [Jatropha curcas]

Gene co-expression network

sample Hb_001366_170 Hb_001366_170 Hb_053709_040 Hb_053709_040 Hb_001366_170--Hb_053709_040 Hb_001902_200 Hb_001902_200 Hb_001366_170--Hb_001902_200 Hb_003207_150 Hb_003207_150 Hb_001366_170--Hb_003207_150 Hb_002490_030 Hb_002490_030 Hb_001366_170--Hb_002490_030 Hb_006351_020 Hb_006351_020 Hb_001366_170--Hb_006351_020 Hb_004032_210 Hb_004032_210 Hb_001366_170--Hb_004032_210 Hb_053709_040--Hb_003207_150 Hb_034726_010 Hb_034726_010 Hb_053709_040--Hb_034726_010 Hb_008185_020 Hb_008185_020 Hb_053709_040--Hb_008185_020 Hb_007632_100 Hb_007632_100 Hb_053709_040--Hb_007632_100 Hb_000177_110 Hb_000177_110 Hb_053709_040--Hb_000177_110 Hb_004147_070 Hb_004147_070 Hb_001902_200--Hb_004147_070 Hb_003813_060 Hb_003813_060 Hb_001902_200--Hb_003813_060 Hb_001369_630 Hb_001369_630 Hb_001902_200--Hb_001369_630 Hb_000086_290 Hb_000086_290 Hb_001902_200--Hb_000086_290 Hb_003408_010 Hb_003408_010 Hb_001902_200--Hb_003408_010 Hb_003207_150--Hb_000177_110 Hb_003207_150--Hb_034726_010 Hb_000671_130 Hb_000671_130 Hb_003207_150--Hb_000671_130 Hb_122636_010 Hb_122636_010 Hb_003207_150--Hb_122636_010 Hb_002272_200 Hb_002272_200 Hb_002490_030--Hb_002272_200 Hb_002900_100 Hb_002900_100 Hb_002490_030--Hb_002900_100 Hb_124951_020 Hb_124951_020 Hb_002490_030--Hb_124951_020 Hb_000816_190 Hb_000816_190 Hb_002490_030--Hb_000816_190 Hb_066514_010 Hb_066514_010 Hb_002490_030--Hb_066514_010 Hb_001119_070 Hb_001119_070 Hb_006351_020--Hb_001119_070 Hb_001545_130 Hb_001545_130 Hb_006351_020--Hb_001545_130 Hb_003929_180 Hb_003929_180 Hb_006351_020--Hb_003929_180 Hb_004223_140 Hb_004223_140 Hb_006351_020--Hb_004223_140 Hb_006351_020--Hb_004032_210 Hb_000152_190 Hb_000152_190 Hb_006351_020--Hb_000152_190 Hb_004032_210--Hb_003929_180 Hb_004032_210--Hb_004223_140 Hb_004032_210--Hb_001545_130 Hb_000003_030 Hb_000003_030 Hb_004032_210--Hb_000003_030 Hb_019654_060 Hb_019654_060 Hb_004032_210--Hb_019654_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.820105 1.96028 11.1955 23.1411 1.82366 1.9327
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.91688 2.16941 2.28063 3.36125 3.80836

CAGE analysis