Hb_002675_090

Information

Type -
Description -
Location Contig2675: 77587-78651
Sequence    

Annotation

kegg
ID rcu:RCOM_0894530
description hypothetical protein
nr
ID XP_002517518.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9M8L2
description F-box/kelch-repeat protein At1g80440 OS=Arabidopsis thaliana GN=At1g80440 PE=2 SV=1
trembl
ID B9RUU9
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0894530 PE=4 SV=1
Gene Ontology
ID GO:0005515
description f-box kelch-repeat protein at1g80440

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27854: 77476-78652
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002675_090 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_002900_100 0.1394302942 - - PREDICTED: L-type lectin-domain containing receptor kinase S.4-like [Jatropha curcas]
3 Hb_066514_010 0.1540947086 - - hypothetical protein RCOM_0204720 [Ricinus communis]
4 Hb_145317_010 0.1668350794 - - PREDICTED: transmembrane 9 superfamily member 11 [Jatropha curcas]
5 Hb_000069_620 0.1673555583 - - serine-threonine protein kinase, putative [Ricinus communis]
6 Hb_008119_030 0.1703879296 - - PREDICTED: peroxidase 63-like [Jatropha curcas]
7 Hb_000637_020 0.1762298818 - - PREDICTED: uncharacterized protein LOC105650669 [Jatropha curcas]
8 Hb_000094_190 0.1782100012 - - PREDICTED: glucan endo-1,3-beta-glucosidase 7-like [Jatropha curcas]
9 Hb_118507_010 0.1791601671 - - hypothetical protein VITISV_019292 [Vitis vinifera]
10 Hb_008054_050 0.1794066992 - - PREDICTED: uncharacterized protein LOC101212042 [Cucumis sativus]
11 Hb_001135_030 0.1799116358 - - PREDICTED: interaptin-like [Jatropha curcas]
12 Hb_071781_010 0.1819247834 - - hypothetical protein POPTR_0010s13190g [Populus trichocarpa]
13 Hb_000816_190 0.1835008464 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000732_240 0.1887903954 - - PREDICTED: dynein light chain 1, cytoplasmic-like [Jatropha curcas]
15 Hb_001754_060 0.1890182296 - - Xyloglucan 6-xylosyltransferase, putative [Ricinus communis]
16 Hb_083628_010 0.1923254505 - - PREDICTED: probable serine protease EDA2 [Jatropha curcas]
17 Hb_005539_310 0.1973898103 - - basic helix-loop-helix-containing protein, putative [Ricinus communis]
18 Hb_000099_190 0.1975482118 - - PREDICTED: putative cell division cycle ATPase [Jatropha curcas]
19 Hb_003964_080 0.1976194861 - - PREDICTED: probable methyltransferase PMT5 [Jatropha curcas]
20 Hb_002490_030 0.1985346843 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_002675_090 Hb_002675_090 Hb_002900_100 Hb_002900_100 Hb_002675_090--Hb_002900_100 Hb_066514_010 Hb_066514_010 Hb_002675_090--Hb_066514_010 Hb_145317_010 Hb_145317_010 Hb_002675_090--Hb_145317_010 Hb_000069_620 Hb_000069_620 Hb_002675_090--Hb_000069_620 Hb_008119_030 Hb_008119_030 Hb_002675_090--Hb_008119_030 Hb_000637_020 Hb_000637_020 Hb_002675_090--Hb_000637_020 Hb_002900_100--Hb_066514_010 Hb_002490_030 Hb_002490_030 Hb_002900_100--Hb_002490_030 Hb_000816_190 Hb_000816_190 Hb_002900_100--Hb_000816_190 Hb_011918_010 Hb_011918_010 Hb_002900_100--Hb_011918_010 Hb_006907_050 Hb_006907_050 Hb_002900_100--Hb_006907_050 Hb_066514_010--Hb_011918_010 Hb_007441_090 Hb_007441_090 Hb_066514_010--Hb_007441_090 Hb_066514_010--Hb_002490_030 Hb_118507_010 Hb_118507_010 Hb_066514_010--Hb_118507_010 Hb_000302_100 Hb_000302_100 Hb_066514_010--Hb_000302_100 Hb_008054_050 Hb_008054_050 Hb_145317_010--Hb_008054_050 Hb_009247_010 Hb_009247_010 Hb_145317_010--Hb_009247_010 Hb_106688_010 Hb_106688_010 Hb_145317_010--Hb_106688_010 Hb_154538_010 Hb_154538_010 Hb_145317_010--Hb_154538_010 Hb_004374_130 Hb_004374_130 Hb_145317_010--Hb_004374_130 Hb_009393_200 Hb_009393_200 Hb_145317_010--Hb_009393_200 Hb_001217_040 Hb_001217_040 Hb_000069_620--Hb_001217_040 Hb_024074_020 Hb_024074_020 Hb_000069_620--Hb_024074_020 Hb_002046_150 Hb_002046_150 Hb_000069_620--Hb_002046_150 Hb_000069_620--Hb_008054_050 Hb_000340_190 Hb_000340_190 Hb_000069_620--Hb_000340_190 Hb_003605_040 Hb_003605_040 Hb_008119_030--Hb_003605_040 Hb_009808_010 Hb_009808_010 Hb_008119_030--Hb_009808_010 Hb_002026_020 Hb_002026_020 Hb_008119_030--Hb_002026_020 Hb_009222_070 Hb_009222_070 Hb_008119_030--Hb_009222_070 Hb_018133_100 Hb_018133_100 Hb_008119_030--Hb_018133_100 Hb_071781_010 Hb_071781_010 Hb_008119_030--Hb_071781_010 Hb_084849_010 Hb_084849_010 Hb_000637_020--Hb_084849_010 Hb_001135_030 Hb_001135_030 Hb_000637_020--Hb_001135_030 Hb_000191_050 Hb_000191_050 Hb_000637_020--Hb_000191_050 Hb_013358_020 Hb_013358_020 Hb_000637_020--Hb_013358_020 Hb_000035_050 Hb_000035_050 Hb_000637_020--Hb_000035_050 Hb_002374_270 Hb_002374_270 Hb_000637_020--Hb_002374_270
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.52237 44.4856 47.4419 119.381 22.266 19.067
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.75085 7.596 12.2654 9.52092 4.31843

CAGE analysis