Hb_000340_190

Information

Type -
Description -
Location Contig340: 187857-188426
Sequence    

Annotation

kegg
ID rcu:RCOM_0648040
description hypothetical protein
nr
ID XP_002524806.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SFN7
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0648040 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000340_190 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_003097_120 0.18746094 - - PREDICTED: cytokinin dehydrogenase 6 [Jatropha curcas]
3 Hb_000069_620 0.1920069845 - - serine-threonine protein kinase, putative [Ricinus communis]
4 Hb_002046_150 0.1948635589 - - PREDICTED: probable receptor-like protein kinase At5g15080 [Jatropha curcas]
5 Hb_004725_050 0.1973621608 - - Rhomboid protein, putative [Ricinus communis]
6 Hb_001856_220 0.1989377003 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000991_040 0.2007539813 - - PREDICTED: E3 ubiquitin-protein ligase RING1-like [Gossypium raimondii]
8 Hb_001217_040 0.2036045055 - - hypothetical protein MIMGU_mgv1a0002421mg, partial [Erythranthe guttata]
9 Hb_001691_040 0.2044503706 - - PREDICTED: uncharacterized protein LOC105649546 isoform X2 [Jatropha curcas]
10 Hb_017948_030 0.2062304818 - - PREDICTED: uncharacterized protein LOC105639493 [Jatropha curcas]
11 Hb_000260_600 0.2075436627 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000395_040 0.2117098678 - - PREDICTED: uncharacterized protein LOC105645576 [Jatropha curcas]
13 Hb_003929_070 0.2121163914 - - CBL-interacting serine/threonine-protein kinase 1 isoform 3 [Theobroma cacao]
14 Hb_004970_180 0.2127316405 - - -
15 Hb_000413_020 0.2137831129 - - PREDICTED: U-box domain-containing protein 8 [Jatropha curcas]
16 Hb_001500_030 0.2149712526 - - PREDICTED: uncharacterized protein At2g33490 isoform X2 [Jatropha curcas]
17 Hb_010519_040 0.2177300821 - - PREDICTED: uncharacterized protein LOC105643567 [Jatropha curcas]
18 Hb_000291_150 0.2184903192 - - PREDICTED: serine hydroxymethyltransferase 7 [Jatropha curcas]
19 Hb_000815_240 0.2218765568 - - PREDICTED: galactoside 2-alpha-L-fucosyltransferase-like isoform X1 [Jatropha curcas]
20 Hb_002078_290 0.2227284054 - - PREDICTED: uncharacterized protein LOC100852520 [Vitis vinifera]

Gene co-expression network

sample Hb_000340_190 Hb_000340_190 Hb_003097_120 Hb_003097_120 Hb_000340_190--Hb_003097_120 Hb_000069_620 Hb_000069_620 Hb_000340_190--Hb_000069_620 Hb_002046_150 Hb_002046_150 Hb_000340_190--Hb_002046_150 Hb_004725_050 Hb_004725_050 Hb_000340_190--Hb_004725_050 Hb_001856_220 Hb_001856_220 Hb_000340_190--Hb_001856_220 Hb_000991_040 Hb_000991_040 Hb_000340_190--Hb_000991_040 Hb_003097_120--Hb_000991_040 Hb_003181_040 Hb_003181_040 Hb_003097_120--Hb_003181_040 Hb_003097_120--Hb_001856_220 Hb_102291_010 Hb_102291_010 Hb_003097_120--Hb_102291_010 Hb_021443_090 Hb_021443_090 Hb_003097_120--Hb_021443_090 Hb_001357_040 Hb_001357_040 Hb_003097_120--Hb_001357_040 Hb_002675_090 Hb_002675_090 Hb_000069_620--Hb_002675_090 Hb_001217_040 Hb_001217_040 Hb_000069_620--Hb_001217_040 Hb_024074_020 Hb_024074_020 Hb_000069_620--Hb_024074_020 Hb_000069_620--Hb_002046_150 Hb_008054_050 Hb_008054_050 Hb_000069_620--Hb_008054_050 Hb_002046_150--Hb_024074_020 Hb_012651_010 Hb_012651_010 Hb_002046_150--Hb_012651_010 Hb_000665_190 Hb_000665_190 Hb_002046_150--Hb_000665_190 Hb_000359_310 Hb_000359_310 Hb_002046_150--Hb_000359_310 Hb_000002_480 Hb_000002_480 Hb_002046_150--Hb_000002_480 Hb_000193_300 Hb_000193_300 Hb_002046_150--Hb_000193_300 Hb_003617_020 Hb_003617_020 Hb_004725_050--Hb_003617_020 Hb_000172_100 Hb_000172_100 Hb_004725_050--Hb_000172_100 Hb_004725_050--Hb_001357_040 Hb_000291_150 Hb_000291_150 Hb_004725_050--Hb_000291_150 Hb_003544_110 Hb_003544_110 Hb_004725_050--Hb_003544_110 Hb_005706_040 Hb_005706_040 Hb_004725_050--Hb_005706_040 Hb_008937_010 Hb_008937_010 Hb_001856_220--Hb_008937_010 Hb_001856_220--Hb_003181_040 Hb_003918_030 Hb_003918_030 Hb_001856_220--Hb_003918_030 Hb_010407_060 Hb_010407_060 Hb_001856_220--Hb_010407_060 Hb_001545_150 Hb_001545_150 Hb_001856_220--Hb_001545_150 Hb_002071_050 Hb_002071_050 Hb_001856_220--Hb_002071_050 Hb_000622_340 Hb_000622_340 Hb_000991_040--Hb_000622_340 Hb_000260_600 Hb_000260_600 Hb_000991_040--Hb_000260_600 Hb_000815_240 Hb_000815_240 Hb_000991_040--Hb_000815_240 Hb_000991_040--Hb_008937_010 Hb_000390_250 Hb_000390_250 Hb_000991_040--Hb_000390_250 Hb_000322_070 Hb_000322_070 Hb_000991_040--Hb_000322_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.25261 4.04421 1.40629 5.73765 1.57351 1.39376
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.436354 2.22885 1.93369 0.0705394 2.13818

CAGE analysis