Hb_102291_010

Information

Type -
Description -
Location Contig102291: 7376-8004
Sequence    

Annotation

kegg
ID pop:POPTR_0005s14990g
description ASF1-like anti-silencing family protein
nr
ID XP_011021322.1
description PREDICTED: histone chaperone ASF1B [Populus euphratica]
swissprot
ID Q9C9M6
description Probable histone chaperone ASF1A OS=Arabidopsis thaliana GN=ASF1A PE=2 SV=1
trembl
ID U5GIA8
description ASF1-like anti-silencing family protein OS=Populus trichocarpa GN=POPTR_0005s14990g PE=4 SV=1
Gene Ontology
ID GO:0005634
description histone chaperone asf1b

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01059: 7431-8295
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_102291_010 0.0 - - PREDICTED: histone chaperone ASF1B [Populus euphratica]
2 Hb_002235_210 0.1042056213 - - PREDICTED: vesicle transport v-SNARE 13-like [Populus euphratica]
3 Hb_005306_160 0.1062777614 - - PREDICTED: glycylpeptide N-tetradecanoyltransferase 1-like [Jatropha curcas]
4 Hb_003746_030 0.1111064794 - - PREDICTED: cytoplasmic tRNA 2-thiolation protein 2 [Jatropha curcas]
5 Hb_014361_150 0.1116616111 - - PREDICTED: uncharacterized protein LOC105639827 [Jatropha curcas]
6 Hb_003371_150 0.1151931074 - - PREDICTED: serine/threonine-protein kinase 10 [Jatropha curcas]
7 Hb_000309_040 0.1169240427 - - PREDICTED: protein farnesyltransferase subunit beta isoform X1 [Jatropha curcas]
8 Hb_005000_320 0.1192946053 - - PREDICTED: casein kinase I isoform delta-like [Jatropha curcas]
9 Hb_002530_010 0.1199314941 - - hypothetical protein EUGRSUZ_C02580 [Eucalyptus grandis]
10 Hb_000718_070 0.1219032279 - - conserved hypothetical protein [Ricinus communis]
11 Hb_001817_150 0.1224472902 - - trehalose-6-phosphate synthase, putative [Ricinus communis]
12 Hb_000576_020 0.1243119617 - - PREDICTED: uncharacterized protein LOC105638286 [Jatropha curcas]
13 Hb_004631_180 0.1244027251 - - PREDICTED: LMBR1 domain-containing protein 2 homolog A [Jatropha curcas]
14 Hb_001804_110 0.1245723691 - - hypothetical protein CISIN_1g031200mg [Citrus sinensis]
15 Hb_000457_050 0.1246409691 - - PREDICTED: tether containing UBX domain for GLUT4 [Jatropha curcas]
16 Hb_003682_030 0.1259979838 - - hypothetical protein CICLE_v10020876mg [Citrus clementina]
17 Hb_000076_160 0.126936259 - - PREDICTED: AP-5 complex subunit zeta-1 [Jatropha curcas]
18 Hb_000563_600 0.1270717212 - - PREDICTED: uncharacterized protein LOC104428079 [Eucalyptus grandis]
19 Hb_003020_270 0.1273308097 - - PREDICTED: ras-related protein Rab2BV [Jatropha curcas]
20 Hb_006816_350 0.1288720365 - - PREDICTED: syntaxin-43 [Jatropha curcas]

Gene co-expression network

sample Hb_102291_010 Hb_102291_010 Hb_002235_210 Hb_002235_210 Hb_102291_010--Hb_002235_210 Hb_005306_160 Hb_005306_160 Hb_102291_010--Hb_005306_160 Hb_003746_030 Hb_003746_030 Hb_102291_010--Hb_003746_030 Hb_014361_150 Hb_014361_150 Hb_102291_010--Hb_014361_150 Hb_003371_150 Hb_003371_150 Hb_102291_010--Hb_003371_150 Hb_000309_040 Hb_000309_040 Hb_102291_010--Hb_000309_040 Hb_004631_180 Hb_004631_180 Hb_002235_210--Hb_004631_180 Hb_001051_080 Hb_001051_080 Hb_002235_210--Hb_001051_080 Hb_003893_030 Hb_003893_030 Hb_002235_210--Hb_003893_030 Hb_012322_020 Hb_012322_020 Hb_002235_210--Hb_012322_020 Hb_006916_040 Hb_006916_040 Hb_002235_210--Hb_006916_040 Hb_004310_020 Hb_004310_020 Hb_002235_210--Hb_004310_020 Hb_000076_160 Hb_000076_160 Hb_005306_160--Hb_000076_160 Hb_002046_110 Hb_002046_110 Hb_005306_160--Hb_002046_110 Hb_000928_220 Hb_000928_220 Hb_005306_160--Hb_000928_220 Hb_000576_020 Hb_000576_020 Hb_005306_160--Hb_000576_020 Hb_000070_080 Hb_000070_080 Hb_005306_160--Hb_000070_080 Hb_005306_160--Hb_000309_040 Hb_000186_330 Hb_000186_330 Hb_003746_030--Hb_000186_330 Hb_001804_110 Hb_001804_110 Hb_003746_030--Hb_001804_110 Hb_007163_060 Hb_007163_060 Hb_003746_030--Hb_007163_060 Hb_000959_230 Hb_000959_230 Hb_003746_030--Hb_000959_230 Hb_010998_040 Hb_010998_040 Hb_003746_030--Hb_010998_040 Hb_004223_110 Hb_004223_110 Hb_003746_030--Hb_004223_110 Hb_000260_440 Hb_000260_440 Hb_014361_150--Hb_000260_440 Hb_002379_050 Hb_002379_050 Hb_014361_150--Hb_002379_050 Hb_004357_020 Hb_004357_020 Hb_014361_150--Hb_004357_020 Hb_000760_020 Hb_000760_020 Hb_014361_150--Hb_000760_020 Hb_000125_200 Hb_000125_200 Hb_014361_150--Hb_000125_200 Hb_014361_150--Hb_005306_160 Hb_001946_040 Hb_001946_040 Hb_003371_150--Hb_001946_040 Hb_000959_270 Hb_000959_270 Hb_003371_150--Hb_000959_270 Hb_000610_010 Hb_000610_010 Hb_003371_150--Hb_000610_010 Hb_004093_090 Hb_004093_090 Hb_003371_150--Hb_004093_090 Hb_003581_070 Hb_003581_070 Hb_003371_150--Hb_003581_070 Hb_036790_100 Hb_036790_100 Hb_003371_150--Hb_036790_100 Hb_002078_110 Hb_002078_110 Hb_000309_040--Hb_002078_110 Hb_000309_040--Hb_001051_080 Hb_000309_040--Hb_000076_160 Hb_001751_140 Hb_001751_140 Hb_000309_040--Hb_001751_140 Hb_138596_010 Hb_138596_010 Hb_000309_040--Hb_138596_010 Hb_002835_230 Hb_002835_230 Hb_000309_040--Hb_002835_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
41.856 43.7349 37.4499 42.7459 41.0333 29.3465
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
15.9443 30.5792 22.3613 7.72422 11.493

CAGE analysis