Hb_003371_150

Information

Type -
Description -
Location Contig3371: 95331-100555
Sequence    

Annotation

kegg
ID pop:POPTR_0001s23520g
description hypothetical protein
nr
ID XP_012092619.1
description PREDICTED: serine/threonine-protein kinase 10 [Jatropha curcas]
swissprot
ID F1SPM8
description AP2-associated protein kinase 1 OS=Sus scrofa GN=AAK1 PE=2 SV=2
trembl
ID A0A067JCC9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05281 PE=4 SV=1
Gene Ontology
ID GO:0004672
description ap2-associated protein kinase 1 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35294: 95354-100384 , PASA_asmbl_35295: 95354-100384
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003371_150 0.0 - - PREDICTED: serine/threonine-protein kinase 10 [Jatropha curcas]
2 Hb_001946_040 0.0767567004 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000959_270 0.0847949457 - - PREDICTED: uncharacterized protein LOC105641005 [Jatropha curcas]
4 Hb_000610_010 0.0897097822 - - PREDICTED: SKP1-like protein 1B [Musa acuminata subsp. malaccensis]
5 Hb_004093_090 0.0918635845 - - PREDICTED: uncharacterized protein LOC105633550 [Jatropha curcas]
6 Hb_003581_070 0.0923216672 - - PREDICTED: putative pentatricopeptide repeat-containing protein At5g40405 [Malus domestica]
7 Hb_036790_100 0.0931156727 - - PREDICTED: uncharacterized protein LOC105645120 [Jatropha curcas]
8 Hb_000275_170 0.094591678 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor GT-3b-like [Jatropha curcas]
9 Hb_002272_020 0.0960093104 transcription factor TF Family: NF-YC PREDICTED: nuclear transcription factor Y subunit C-3 [Jatropha curcas]
10 Hb_008511_030 0.097610038 - - guanine nucleotide-binding protein beta, putative [Ricinus communis]
11 Hb_106552_050 0.0983563999 - - PREDICTED: uncharacterized protein LOC105642134 [Jatropha curcas]
12 Hb_002192_080 0.0984153018 - - hypothetical protein B456_013G069200 [Gossypium raimondii]
13 Hb_002740_030 0.0997007893 transcription factor TF Family: bHLH conserved hypothetical protein [Ricinus communis]
14 Hb_003052_140 0.1010477806 - - s-adenosylmethionine decarboxylase, putative [Ricinus communis]
15 Hb_189147_010 0.1017509358 transcription factor TF Family: mTERF conserved hypothetical protein [Ricinus communis]
16 Hb_032208_040 0.1036512599 - - PREDICTED: serine/arginine-rich SC35-like splicing factor SCL33 [Populus euphratica]
17 Hb_003050_200 0.1041108958 - - Ribosomal protein L18ae/LX family protein [Theobroma cacao]
18 Hb_000214_040 0.1057749134 - - conserved hypothetical protein [Ricinus communis]
19 Hb_001247_130 0.1061887464 - - PREDICTED: shaggy-related protein kinase alpha [Jatropha curcas]
20 Hb_000261_250 0.106218512 - - elongation factor 1-alpha [Lepidium sativum]

Gene co-expression network

sample Hb_003371_150 Hb_003371_150 Hb_001946_040 Hb_001946_040 Hb_003371_150--Hb_001946_040 Hb_000959_270 Hb_000959_270 Hb_003371_150--Hb_000959_270 Hb_000610_010 Hb_000610_010 Hb_003371_150--Hb_000610_010 Hb_004093_090 Hb_004093_090 Hb_003371_150--Hb_004093_090 Hb_003581_070 Hb_003581_070 Hb_003371_150--Hb_003581_070 Hb_036790_100 Hb_036790_100 Hb_003371_150--Hb_036790_100 Hb_031527_020 Hb_031527_020 Hb_001946_040--Hb_031527_020 Hb_000336_250 Hb_000336_250 Hb_001946_040--Hb_000336_250 Hb_000309_040 Hb_000309_040 Hb_001946_040--Hb_000309_040 Hb_001247_130 Hb_001247_130 Hb_001946_040--Hb_001247_130 Hb_004055_150 Hb_004055_150 Hb_001946_040--Hb_004055_150 Hb_000732_120 Hb_000732_120 Hb_000959_270--Hb_000732_120 Hb_033153_070 Hb_033153_070 Hb_000959_270--Hb_033153_070 Hb_006960_050 Hb_006960_050 Hb_000959_270--Hb_006960_050 Hb_000785_030 Hb_000785_030 Hb_000959_270--Hb_000785_030 Hb_008511_030 Hb_008511_030 Hb_000959_270--Hb_008511_030 Hb_004631_180 Hb_004631_180 Hb_000959_270--Hb_004631_180 Hb_000009_530 Hb_000009_530 Hb_000610_010--Hb_000009_530 Hb_000610_010--Hb_004093_090 Hb_003687_230 Hb_003687_230 Hb_000610_010--Hb_003687_230 Hb_000107_190 Hb_000107_190 Hb_000610_010--Hb_000107_190 Hb_073973_130 Hb_073973_130 Hb_000610_010--Hb_073973_130 Hb_003292_040 Hb_003292_040 Hb_000610_010--Hb_003292_040 Hb_005588_030 Hb_005588_030 Hb_004093_090--Hb_005588_030 Hb_120410_010 Hb_120410_010 Hb_004093_090--Hb_120410_010 Hb_000959_210 Hb_000959_210 Hb_004093_090--Hb_000959_210 Hb_000362_200 Hb_000362_200 Hb_004093_090--Hb_000362_200 Hb_004093_090--Hb_000009_530 Hb_002813_040 Hb_002813_040 Hb_003581_070--Hb_002813_040 Hb_003052_140 Hb_003052_140 Hb_003581_070--Hb_003052_140 Hb_004228_030 Hb_004228_030 Hb_003581_070--Hb_004228_030 Hb_002256_030 Hb_002256_030 Hb_003581_070--Hb_002256_030 Hb_000125_170 Hb_000125_170 Hb_003581_070--Hb_000125_170 Hb_001595_030 Hb_001595_030 Hb_036790_100--Hb_001595_030 Hb_000403_050 Hb_000403_050 Hb_036790_100--Hb_000403_050 Hb_001242_060 Hb_001242_060 Hb_036790_100--Hb_001242_060 Hb_036790_100--Hb_002256_030 Hb_001258_090 Hb_001258_090 Hb_036790_100--Hb_001258_090 Hb_000416_040 Hb_000416_040 Hb_036790_100--Hb_000416_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
46.7399 31.6602 26.1853 24.3052 33.0118 30.4528
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
18.0275 40.2988 19.451 11.7855 12.4182

CAGE analysis