Hb_004725_050

Information

Type -
Description -
Location Contig4725: 74897-75706
Sequence    

Annotation

kegg
ID rcu:RCOM_0455880
description Rhomboid protein, putative
nr
ID XP_002529496.1
description Rhomboid protein, putative [Ricinus communis]
swissprot
ID Q8TEB9
description Rhomboid-related protein 4 OS=Homo sapiens GN=RHBDD1 PE=1 SV=1
trembl
ID B9SU27
description Rhomboid protein, putative OS=Ricinus communis GN=RCOM_0455880 PE=4 SV=1
Gene Ontology
ID GO:0016021
description rhomboid protein 2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44402: 74561-75879 , PASA_asmbl_44403: 76013-76229
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004725_050 0.0 - - Rhomboid protein, putative [Ricinus communis]
2 Hb_003617_020 0.0861803897 - - PREDICTED: uncharacterized protein LOC105638179 [Jatropha curcas]
3 Hb_000172_100 0.0900424236 - - PREDICTED: acyl-coenzyme A oxidase 2, peroxisomal [Jatropha curcas]
4 Hb_001357_040 0.0915453384 transcription factor TF Family: ERF ethylene-responsive transcription factor 3-like [Jatropha curcas]
5 Hb_000291_150 0.0947385289 - - PREDICTED: serine hydroxymethyltransferase 7 [Jatropha curcas]
6 Hb_003544_110 0.0958595154 - - PREDICTED: zinc finger BED domain-containing protein RICESLEEPER 2-like isoform X1 [Jatropha curcas]
7 Hb_005706_040 0.09842807 - - PREDICTED: uncharacterized protein LOC105642418 [Jatropha curcas]
8 Hb_000329_230 0.098663248 - - PREDICTED: uncharacterized protein LOC105643152 [Jatropha curcas]
9 Hb_002400_460 0.1020367026 - - PREDICTED: uncharacterized protein LOC105637599 isoform X2 [Jatropha curcas]
10 Hb_000069_310 0.1043312369 - - ubiquitin ligase [Cucumis melo subsp. melo]
11 Hb_001799_180 0.104954048 - - PREDICTED: serine/threonine-protein kinase D6PK [Jatropha curcas]
12 Hb_000174_270 0.1066635047 - - PREDICTED: type II inositol 1,4,5-trisphosphate 5-phosphatase FRA3 isoform X1 [Jatropha curcas]
13 Hb_001674_030 0.1067284783 - - PREDICTED: BTB/POZ domain-containing protein At2g24240 [Jatropha curcas]
14 Hb_000049_260 0.1068879075 - - WD-repeat protein, putative [Ricinus communis]
15 Hb_000061_240 0.1078202635 - - kinase, putative [Ricinus communis]
16 Hb_003607_130 0.1079948149 - - serine/threonine protein kinase, putative [Ricinus communis]
17 Hb_004553_030 0.1080317317 - - PREDICTED: uncharacterized protein LOC105629320 [Jatropha curcas]
18 Hb_002818_030 0.109002708 - - PREDICTED: protein transport protein SEC23 [Jatropha curcas]
19 Hb_015807_150 0.1103860688 - - actin binding protein, putative [Ricinus communis]
20 Hb_001366_310 0.1108689736 - - PREDICTED: protein phosphatase 2C 32 [Jatropha curcas]

Gene co-expression network

sample Hb_004725_050 Hb_004725_050 Hb_003617_020 Hb_003617_020 Hb_004725_050--Hb_003617_020 Hb_000172_100 Hb_000172_100 Hb_004725_050--Hb_000172_100 Hb_001357_040 Hb_001357_040 Hb_004725_050--Hb_001357_040 Hb_000291_150 Hb_000291_150 Hb_004725_050--Hb_000291_150 Hb_003544_110 Hb_003544_110 Hb_004725_050--Hb_003544_110 Hb_005706_040 Hb_005706_040 Hb_004725_050--Hb_005706_040 Hb_000329_230 Hb_000329_230 Hb_003617_020--Hb_000329_230 Hb_003617_020--Hb_001357_040 Hb_012395_170 Hb_012395_170 Hb_003617_020--Hb_012395_170 Hb_005276_060 Hb_005276_060 Hb_003617_020--Hb_005276_060 Hb_000322_070 Hb_000322_070 Hb_003617_020--Hb_000322_070 Hb_000072_120 Hb_000072_120 Hb_003617_020--Hb_000072_120 Hb_000172_100--Hb_000291_150 Hb_066920_030 Hb_066920_030 Hb_000172_100--Hb_066920_030 Hb_003607_130 Hb_003607_130 Hb_000172_100--Hb_003607_130 Hb_000172_100--Hb_003617_020 Hb_000172_100--Hb_000072_120 Hb_001377_270 Hb_001377_270 Hb_001357_040--Hb_001377_270 Hb_001674_030 Hb_001674_030 Hb_001357_040--Hb_001674_030 Hb_000080_150 Hb_000080_150 Hb_001357_040--Hb_000080_150 Hb_000931_020 Hb_000931_020 Hb_001357_040--Hb_000931_020 Hb_034585_010 Hb_034585_010 Hb_000291_150--Hb_034585_010 Hb_000291_150--Hb_003617_020 Hb_001329_250 Hb_001329_250 Hb_000291_150--Hb_001329_250 Hb_001440_020 Hb_001440_020 Hb_000291_150--Hb_001440_020 Hb_002289_060 Hb_002289_060 Hb_000291_150--Hb_002289_060 Hb_001366_310 Hb_001366_310 Hb_003544_110--Hb_001366_310 Hb_012564_030 Hb_012564_030 Hb_003544_110--Hb_012564_030 Hb_002818_030 Hb_002818_030 Hb_003544_110--Hb_002818_030 Hb_003494_020 Hb_003494_020 Hb_003544_110--Hb_003494_020 Hb_004916_010 Hb_004916_010 Hb_003544_110--Hb_004916_010 Hb_048219_010 Hb_048219_010 Hb_003544_110--Hb_048219_010 Hb_000487_270 Hb_000487_270 Hb_005706_040--Hb_000487_270 Hb_000003_590 Hb_000003_590 Hb_005706_040--Hb_000003_590 Hb_005706_040--Hb_066920_030 Hb_011249_070 Hb_011249_070 Hb_005706_040--Hb_011249_070 Hb_079326_020 Hb_079326_020 Hb_005706_040--Hb_079326_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.5163 22.2643 8.56474 22.8779 13.546 12.1192
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.55948 13.5719 18.1498 6.37804 13.7436

CAGE analysis