Hb_000291_150

Information

Type -
Description -
Location Contig291: 123400-129965
Sequence    

Annotation

kegg
ID rcu:RCOM_1033180
description serine hydroxymethyltransferase, putative (EC:2.1.2.1)
nr
ID XP_012078135.1
description PREDICTED: serine hydroxymethyltransferase 7 [Jatropha curcas]
swissprot
ID Q9LM59
description Serine hydroxymethyltransferase 6 OS=Arabidopsis thaliana GN=SHM6 PE=2 SV=1
trembl
ID A0A067K951
description Serine hydroxymethyltransferase OS=Jatropha curcas GN=JCGZ_12023 PE=3 SV=1
Gene Ontology
ID GO:0004372
description serine hydroxymethyltransferase 7-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30509: 123390-129913 , PASA_asmbl_30511: 124792-125219 , PASA_asmbl_30512: 123431-129895
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000291_150 0.0 - - PREDICTED: serine hydroxymethyltransferase 7 [Jatropha curcas]
2 Hb_034585_010 0.0805819562 - - PREDICTED: uncharacterized protein LOC105639637 [Jatropha curcas]
3 Hb_003617_020 0.0829896405 - - PREDICTED: uncharacterized protein LOC105638179 [Jatropha curcas]
4 Hb_001329_250 0.0842861148 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105642692 isoform X1 [Jatropha curcas]
5 Hb_001440_020 0.0902830893 - - exocyst componenet sec8, putative [Ricinus communis]
6 Hb_004725_050 0.0947385289 - - Rhomboid protein, putative [Ricinus communis]
7 Hb_002289_060 0.0951203699 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000174_270 0.0956662191 - - PREDICTED: type II inositol 1,4,5-trisphosphate 5-phosphatase FRA3 isoform X1 [Jatropha curcas]
9 Hb_000172_100 0.0963662193 - - PREDICTED: acyl-coenzyme A oxidase 2, peroxisomal [Jatropha curcas]
10 Hb_019181_040 0.0964909966 - - component of oligomeric golgi complex, putative [Ricinus communis]
11 Hb_009296_080 0.1007548452 - - PREDICTED: probable apyrase 7 isoform X1 [Jatropha curcas]
12 Hb_002400_460 0.1017410415 - - PREDICTED: uncharacterized protein LOC105637599 isoform X2 [Jatropha curcas]
13 Hb_012114_100 0.1025322277 - - PREDICTED: probable serine/threonine-protein kinase At5g41260 [Jatropha curcas]
14 Hb_001863_360 0.1027775115 - - PREDICTED: 5'-adenylylsulfate reductase-like 4 [Jatropha curcas]
15 Hb_004137_020 0.1028820515 - - PREDICTED: putative UDP-glucuronate:xylan alpha-glucuronosyltransferase 3 isoform X2 [Jatropha curcas]
16 Hb_012632_010 0.1029542349 - - PREDICTED: uncharacterized protein LOC105640019 [Jatropha curcas]
17 Hb_003498_080 0.1049777567 - - PREDICTED: decapping 5-like protein isoform X2 [Jatropha curcas]
18 Hb_012518_070 0.1058759129 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 9 isoform X1 [Jatropha curcas]
19 Hb_004410_120 0.106976504 - - PREDICTED: uncharacterized protein LOC105633877 isoform X1 [Jatropha curcas]
20 Hb_012055_040 0.1094343303 - - PREDICTED: U-box domain-containing protein 4 [Jatropha curcas]

Gene co-expression network

sample Hb_000291_150 Hb_000291_150 Hb_034585_010 Hb_034585_010 Hb_000291_150--Hb_034585_010 Hb_003617_020 Hb_003617_020 Hb_000291_150--Hb_003617_020 Hb_001329_250 Hb_001329_250 Hb_000291_150--Hb_001329_250 Hb_001440_020 Hb_001440_020 Hb_000291_150--Hb_001440_020 Hb_004725_050 Hb_004725_050 Hb_000291_150--Hb_004725_050 Hb_002289_060 Hb_002289_060 Hb_000291_150--Hb_002289_060 Hb_034585_010--Hb_002289_060 Hb_000465_280 Hb_000465_280 Hb_034585_010--Hb_000465_280 Hb_034585_010--Hb_001329_250 Hb_001279_040 Hb_001279_040 Hb_034585_010--Hb_001279_040 Hb_001029_040 Hb_001029_040 Hb_034585_010--Hb_001029_040 Hb_000329_230 Hb_000329_230 Hb_003617_020--Hb_000329_230 Hb_001357_040 Hb_001357_040 Hb_003617_020--Hb_001357_040 Hb_012395_170 Hb_012395_170 Hb_003617_020--Hb_012395_170 Hb_005276_060 Hb_005276_060 Hb_003617_020--Hb_005276_060 Hb_000322_070 Hb_000322_070 Hb_003617_020--Hb_000322_070 Hb_000072_120 Hb_000072_120 Hb_003617_020--Hb_000072_120 Hb_003498_080 Hb_003498_080 Hb_001329_250--Hb_003498_080 Hb_000212_420 Hb_000212_420 Hb_001329_250--Hb_000212_420 Hb_005214_140 Hb_005214_140 Hb_001329_250--Hb_005214_140 Hb_004044_050 Hb_004044_050 Hb_001329_250--Hb_004044_050 Hb_001828_170 Hb_001828_170 Hb_001329_250--Hb_001828_170 Hb_000270_190 Hb_000270_190 Hb_001329_250--Hb_000270_190 Hb_012518_070 Hb_012518_070 Hb_001440_020--Hb_012518_070 Hb_012114_100 Hb_012114_100 Hb_001440_020--Hb_012114_100 Hb_008511_020 Hb_008511_020 Hb_001440_020--Hb_008511_020 Hb_003097_140 Hb_003097_140 Hb_001440_020--Hb_003097_140 Hb_002675_030 Hb_002675_030 Hb_001440_020--Hb_002675_030 Hb_001440_020--Hb_001329_250 Hb_004725_050--Hb_003617_020 Hb_000172_100 Hb_000172_100 Hb_004725_050--Hb_000172_100 Hb_004725_050--Hb_001357_040 Hb_003544_110 Hb_003544_110 Hb_004725_050--Hb_003544_110 Hb_005706_040 Hb_005706_040 Hb_004725_050--Hb_005706_040 Hb_000062_540 Hb_000062_540 Hb_002289_060--Hb_000062_540 Hb_001946_180 Hb_001946_180 Hb_002289_060--Hb_001946_180 Hb_001157_230 Hb_001157_230 Hb_002289_060--Hb_001157_230 Hb_001876_040 Hb_001876_040 Hb_002289_060--Hb_001876_040 Hb_001916_090 Hb_001916_090 Hb_002289_060--Hb_001916_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
16.7021 30.6421 19.5374 44.764 22.8183 21.7279
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
14.4408 14.7556 31.6924 13.8983 35.0271

CAGE analysis