Hb_005706_040

Information

Type -
Description -
Location Contig5706: 24938-35509
Sequence    

Annotation

kegg
ID pop:POPTR_0019s09690g
description hypothetical protein
nr
ID XP_012082627.1
description PREDICTED: uncharacterized protein LOC105642418 [Jatropha curcas]
swissprot
ID O59729
description Uncharacterized protein slp1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC3E7.09 PE=3 SV=1
trembl
ID A0A067JYL2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19528 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49348: 25512-35208 , PASA_asmbl_49352: 31261-31524
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005706_040 0.0 - - PREDICTED: uncharacterized protein LOC105642418 [Jatropha curcas]
2 Hb_000487_270 0.0804052062 - - hypothetical protein JCGZ_22651 [Jatropha curcas]
3 Hb_000003_590 0.0966806606 - - PREDICTED: uncharacterized protein LOC105631550 isoform X2 [Jatropha curcas]
4 Hb_004725_050 0.09842807 - - Rhomboid protein, putative [Ricinus communis]
5 Hb_066920_030 0.1010874682 - - PREDICTED: adagio protein 1 [Jatropha curcas]
6 Hb_011249_070 0.1016781384 - - hypothetical protein POPTR_0018s12610g [Populus trichocarpa]
7 Hb_079326_020 0.1022859502 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000208_280 0.1039373162 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 78 [Jatropha curcas]
9 Hb_019863_070 0.1057180475 - - PREDICTED: regulatory-associated protein of TOR 1 isoform X1 [Jatropha curcas]
10 Hb_002400_460 0.1066556462 - - PREDICTED: uncharacterized protein LOC105637599 isoform X2 [Jatropha curcas]
11 Hb_002818_030 0.1078636656 - - PREDICTED: protein transport protein SEC23 [Jatropha curcas]
12 Hb_000836_380 0.1089960111 - - PREDICTED: C-terminal binding protein AN-like [Populus euphratica]
13 Hb_112198_010 0.1094410775 - - PREDICTED: F-box protein SKIP22 [Jatropha curcas]
14 Hb_062226_070 0.1097146244 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 4 isoform X1 [Jatropha curcas]
15 Hb_000029_060 0.1097203657 - - PREDICTED: mRNA-decapping enzyme-like protein [Jatropha curcas]
16 Hb_000174_270 0.1099255737 - - PREDICTED: type II inositol 1,4,5-trisphosphate 5-phosphatase FRA3 isoform X1 [Jatropha curcas]
17 Hb_002450_020 0.11020221 - - PREDICTED: probable transcriptional regulator SLK2 [Jatropha curcas]
18 Hb_001799_180 0.1102046743 - - PREDICTED: serine/threonine-protein kinase D6PK [Jatropha curcas]
19 Hb_001405_160 0.1106034722 - - PREDICTED: putative pentatricopeptide repeat-containing protein At1g09680 [Jatropha curcas]
20 Hb_000753_230 0.1109773005 - - PREDICTED: probable galacturonosyltransferase 11 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_005706_040 Hb_005706_040 Hb_000487_270 Hb_000487_270 Hb_005706_040--Hb_000487_270 Hb_000003_590 Hb_000003_590 Hb_005706_040--Hb_000003_590 Hb_004725_050 Hb_004725_050 Hb_005706_040--Hb_004725_050 Hb_066920_030 Hb_066920_030 Hb_005706_040--Hb_066920_030 Hb_011249_070 Hb_011249_070 Hb_005706_040--Hb_011249_070 Hb_079326_020 Hb_079326_020 Hb_005706_040--Hb_079326_020 Hb_000574_450 Hb_000574_450 Hb_000487_270--Hb_000574_450 Hb_004990_010 Hb_004990_010 Hb_000487_270--Hb_004990_010 Hb_010515_020 Hb_010515_020 Hb_000487_270--Hb_010515_020 Hb_008279_040 Hb_008279_040 Hb_000487_270--Hb_008279_040 Hb_000208_280 Hb_000208_280 Hb_000487_270--Hb_000208_280 Hb_001679_050 Hb_001679_050 Hb_000487_270--Hb_001679_050 Hb_000032_520 Hb_000032_520 Hb_000003_590--Hb_000032_520 Hb_002110_190 Hb_002110_190 Hb_000003_590--Hb_002110_190 Hb_001377_490 Hb_001377_490 Hb_000003_590--Hb_001377_490 Hb_004567_090 Hb_004567_090 Hb_000003_590--Hb_004567_090 Hb_001377_510 Hb_001377_510 Hb_000003_590--Hb_001377_510 Hb_000003_590--Hb_000487_270 Hb_003617_020 Hb_003617_020 Hb_004725_050--Hb_003617_020 Hb_000172_100 Hb_000172_100 Hb_004725_050--Hb_000172_100 Hb_001357_040 Hb_001357_040 Hb_004725_050--Hb_001357_040 Hb_000291_150 Hb_000291_150 Hb_004725_050--Hb_000291_150 Hb_003544_110 Hb_003544_110 Hb_004725_050--Hb_003544_110 Hb_001404_110 Hb_001404_110 Hb_066920_030--Hb_001404_110 Hb_001723_100 Hb_001723_100 Hb_066920_030--Hb_001723_100 Hb_005977_070 Hb_005977_070 Hb_066920_030--Hb_005977_070 Hb_004030_080 Hb_004030_080 Hb_066920_030--Hb_004030_080 Hb_002830_010 Hb_002830_010 Hb_066920_030--Hb_002830_010 Hb_000347_400 Hb_000347_400 Hb_066920_030--Hb_000347_400 Hb_001712_060 Hb_001712_060 Hb_011249_070--Hb_001712_060 Hb_012114_100 Hb_012114_100 Hb_011249_070--Hb_012114_100 Hb_000300_270 Hb_000300_270 Hb_011249_070--Hb_000300_270 Hb_012055_040 Hb_012055_040 Hb_011249_070--Hb_012055_040 Hb_002883_030 Hb_002883_030 Hb_011249_070--Hb_002883_030 Hb_003498_080 Hb_003498_080 Hb_011249_070--Hb_003498_080 Hb_011849_040 Hb_011849_040 Hb_079326_020--Hb_011849_040 Hb_000009_500 Hb_000009_500 Hb_079326_020--Hb_000009_500 Hb_001716_020 Hb_001716_020 Hb_079326_020--Hb_001716_020 Hb_001089_050 Hb_001089_050 Hb_079326_020--Hb_001089_050 Hb_002960_080 Hb_002960_080 Hb_079326_020--Hb_002960_080 Hb_000402_230 Hb_000402_230 Hb_079326_020--Hb_000402_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.27661 15.3871 5.04956 14.4967 7.13281 10.4753
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.53366 10.583 10.3647 6.66232 12.4088

CAGE analysis