Hb_000445_150

Information

Type -
Description -
Location Contig445: 172497-181364
Sequence    

Annotation

kegg
ID rcu:RCOM_0561530
description UDP-n-acteylglucosamine pyrophosphorylase, putative
nr
ID XP_012078333.1
description PREDICTED: UDP-sugar pyrophosphorylase [Jatropha curcas]
swissprot
ID Q0GZS3
description UDP-sugar pyrophosphorylase OS=Cucumis melo GN=USP PE=1 SV=1
trembl
ID A0A067KKS0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12162 PE=4 SV=1
Gene Ontology
ID GO:0005829
description udp-sugar pyrophosphorylase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42897: 172661-184025 , PASA_asmbl_42899: 172661-181189
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000445_150 0.0 - - PREDICTED: UDP-sugar pyrophosphorylase [Jatropha curcas]
2 Hb_002596_080 0.1255765399 - - PREDICTED: probable sugar phosphate/phosphate translocator At5g04160 [Jatropha curcas]
3 Hb_000417_170 0.1294774757 - - PREDICTED: uncharacterized protein LOC105649689 [Jatropha curcas]
4 Hb_003994_300 0.1342627036 - - conserved hypothetical protein [Ricinus communis]
5 Hb_002157_270 0.1352116594 - - PREDICTED: transmembrane protein 87B [Jatropha curcas]
6 Hb_001584_130 0.1532966499 - - PREDICTED: uncharacterized protein LOC105647410 [Jatropha curcas]
7 Hb_011310_040 0.153351119 transcription factor TF Family: bZIP transcription factor hy5, putative [Ricinus communis]
8 Hb_001976_060 0.1574137182 - - PREDICTED: nucleobase-ascorbate transporter 11 isoform X1 [Jatropha curcas]
9 Hb_000011_220 0.1578934587 - - PREDICTED: uncharacterized protein LOC105631313 [Jatropha curcas]
10 Hb_001004_080 0.1579908415 - - hypothetical protein POPTR_0014s14130g [Populus trichocarpa]
11 Hb_002129_020 0.158039416 - - PREDICTED: probable beta-1,4-xylosyltransferase IRX14 [Jatropha curcas]
12 Hb_001140_170 0.1594545549 - - PREDICTED: remorin [Jatropha curcas]
13 Hb_007477_050 0.1617000354 - - PREDICTED: protein LOW PSII ACCUMULATION 1, chloroplastic [Jatropha curcas]
14 Hb_001104_130 0.1711130941 - - C-14 sterol reductase, putative [Ricinus communis]
15 Hb_001049_150 0.1722445723 - - PREDICTED: probable beta-1,3-galactosyltransferase 11 [Jatropha curcas]
16 Hb_001493_060 0.1729899531 - - PREDICTED: uncharacterized protein LOC105631313 [Jatropha curcas]
17 Hb_001195_090 0.1739710775 - - PREDICTED: isoflavone reductase-like protein [Jatropha curcas]
18 Hb_002164_020 0.1748478017 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000062_400 0.1770003179 - - conserved hypothetical protein [Ricinus communis]
20 Hb_027445_030 0.179033087 - - F-box/LRR-repeat protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000445_150 Hb_000445_150 Hb_002596_080 Hb_002596_080 Hb_000445_150--Hb_002596_080 Hb_000417_170 Hb_000417_170 Hb_000445_150--Hb_000417_170 Hb_003994_300 Hb_003994_300 Hb_000445_150--Hb_003994_300 Hb_002157_270 Hb_002157_270 Hb_000445_150--Hb_002157_270 Hb_001584_130 Hb_001584_130 Hb_000445_150--Hb_001584_130 Hb_011310_040 Hb_011310_040 Hb_000445_150--Hb_011310_040 Hb_002596_080--Hb_011310_040 Hb_001493_060 Hb_001493_060 Hb_002596_080--Hb_001493_060 Hb_002596_080--Hb_002157_270 Hb_003226_250 Hb_003226_250 Hb_002596_080--Hb_003226_250 Hb_001195_090 Hb_001195_090 Hb_002596_080--Hb_001195_090 Hb_030959_010 Hb_030959_010 Hb_000417_170--Hb_030959_010 Hb_009252_010 Hb_009252_010 Hb_000417_170--Hb_009252_010 Hb_003746_010 Hb_003746_010 Hb_000417_170--Hb_003746_010 Hb_004097_090 Hb_004097_090 Hb_000417_170--Hb_004097_090 Hb_005348_110 Hb_005348_110 Hb_000417_170--Hb_005348_110 Hb_000665_190 Hb_000665_190 Hb_003994_300--Hb_000665_190 Hb_027445_030 Hb_027445_030 Hb_003994_300--Hb_027445_030 Hb_007477_050 Hb_007477_050 Hb_003994_300--Hb_007477_050 Hb_003994_300--Hb_003746_010 Hb_001049_150 Hb_001049_150 Hb_003994_300--Hb_001049_150 Hb_000399_060 Hb_000399_060 Hb_003994_300--Hb_000399_060 Hb_002157_270--Hb_011310_040 Hb_002129_020 Hb_002129_020 Hb_002157_270--Hb_002129_020 Hb_000950_030 Hb_000950_030 Hb_002157_270--Hb_000950_030 Hb_002157_270--Hb_001493_060 Hb_002164_020 Hb_002164_020 Hb_002157_270--Hb_002164_020 Hb_001004_080 Hb_001004_080 Hb_001584_130--Hb_001004_080 Hb_003647_020 Hb_003647_020 Hb_001584_130--Hb_003647_020 Hb_012339_010 Hb_012339_010 Hb_001584_130--Hb_012339_010 Hb_001584_130--Hb_001049_150 Hb_001584_130--Hb_003994_300 Hb_000139_300 Hb_000139_300 Hb_011310_040--Hb_000139_300 Hb_011310_040--Hb_003226_250 Hb_011310_040--Hb_002164_020 Hb_004306_110 Hb_004306_110 Hb_011310_040--Hb_004306_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.51586 4.58148 7.94938 52.1426 6.95493 11.2315
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.0817 7.97818 3.32359 5.49653 43.9522

CAGE analysis