Hb_004097_090

Information

Type -
Description -
Location Contig4097: 98013-99025
Sequence    

Annotation

kegg
ID rcu:RCOM_1382610
description hypothetical protein
nr
ID XP_012072774.1
description PREDICTED: uncharacterized protein LOC105634517 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067L0K7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06972 PE=4 SV=1
Gene Ontology
ID GO:0009535
description PREDICTED: uncharacterized protein LOC105634517

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40455: 98171-98993
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004097_090 0.0 - - PREDICTED: uncharacterized protein LOC105634517 [Jatropha curcas]
2 Hb_000300_510 0.1052667816 - - PREDICTED: uncharacterized protein LOC105632605 [Jatropha curcas]
3 Hb_001627_040 0.1272842058 transcription factor TF Family: SBP PREDICTED: squamosa promoter-binding-like protein 6 isoform X1 [Jatropha curcas]
4 Hb_005192_010 0.1279300923 - - PREDICTED: U-box domain-containing protein 4 [Jatropha curcas]
5 Hb_000417_170 0.1292642242 - - PREDICTED: uncharacterized protein LOC105649689 [Jatropha curcas]
6 Hb_001421_090 0.1298480233 - - hypothetical protein RCOM_1278080 [Ricinus communis]
7 Hb_000120_860 0.1298588419 - - nucellin, putative [Ricinus communis]
8 Hb_005116_140 0.1305694991 - - PREDICTED: RAN GTPase-activating protein 1 [Jatropha curcas]
9 Hb_030959_010 0.1315230406 - - cullin, putative [Ricinus communis]
10 Hb_012799_190 0.1364936339 - - PREDICTED: uncharacterized protein LOC105648490 [Jatropha curcas]
11 Hb_000000_310 0.1369935614 - - metalloendopeptidase, putative [Ricinus communis]
12 Hb_001140_170 0.1381013444 - - PREDICTED: remorin [Jatropha curcas]
13 Hb_000422_080 0.1387688006 transcription factor TF Family: E2F-DP PREDICTED: transcription factor E2FB isoform X1 [Jatropha curcas]
14 Hb_007313_040 0.1388898386 - - hypothetical protein JCGZ_23401 [Jatropha curcas]
15 Hb_000473_120 0.139696053 - - hypothetical protein JCGZ_16177 [Jatropha curcas]
16 Hb_000107_250 0.1415728467 - - voltage-gated clc-type chloride channel, putative [Ricinus communis]
17 Hb_000200_350 0.1418236539 - - PREDICTED: uncharacterized protein LOC105636929 [Jatropha curcas]
18 Hb_027445_030 0.1431131259 - - F-box/LRR-repeat protein, putative [Ricinus communis]
19 Hb_001029_040 0.1450648766 - - PREDICTED: uncharacterized protein LOC105641058 [Jatropha curcas]
20 Hb_005375_110 0.1460781547 - - metal tolerance protein 1 [Populus trichocarpa x Populus deltoides]

Gene co-expression network

sample Hb_004097_090 Hb_004097_090 Hb_000300_510 Hb_000300_510 Hb_004097_090--Hb_000300_510 Hb_001627_040 Hb_001627_040 Hb_004097_090--Hb_001627_040 Hb_005192_010 Hb_005192_010 Hb_004097_090--Hb_005192_010 Hb_000417_170 Hb_000417_170 Hb_004097_090--Hb_000417_170 Hb_001421_090 Hb_001421_090 Hb_004097_090--Hb_001421_090 Hb_000120_860 Hb_000120_860 Hb_004097_090--Hb_000120_860 Hb_000000_310 Hb_000000_310 Hb_000300_510--Hb_000000_310 Hb_000300_510--Hb_005192_010 Hb_000922_060 Hb_000922_060 Hb_000300_510--Hb_000922_060 Hb_003682_070 Hb_003682_070 Hb_000300_510--Hb_003682_070 Hb_000300_510--Hb_001421_090 Hb_000684_390 Hb_000684_390 Hb_000300_510--Hb_000684_390 Hb_001029_040 Hb_001029_040 Hb_001627_040--Hb_001029_040 Hb_001080_300 Hb_001080_300 Hb_001627_040--Hb_001080_300 Hb_004957_030 Hb_004957_030 Hb_001627_040--Hb_004957_030 Hb_007545_010 Hb_007545_010 Hb_001627_040--Hb_007545_010 Hb_000803_320 Hb_000803_320 Hb_001627_040--Hb_000803_320 Hb_000417_390 Hb_000417_390 Hb_001627_040--Hb_000417_390 Hb_003975_010 Hb_003975_010 Hb_005192_010--Hb_003975_010 Hb_005192_010--Hb_001029_040 Hb_003746_010 Hb_003746_010 Hb_005192_010--Hb_003746_010 Hb_005192_010--Hb_000922_060 Hb_001754_020 Hb_001754_020 Hb_005192_010--Hb_001754_020 Hb_030959_010 Hb_030959_010 Hb_000417_170--Hb_030959_010 Hb_009252_010 Hb_009252_010 Hb_000417_170--Hb_009252_010 Hb_000417_170--Hb_003746_010 Hb_000445_150 Hb_000445_150 Hb_000417_170--Hb_000445_150 Hb_005348_110 Hb_005348_110 Hb_000417_170--Hb_005348_110 Hb_000617_250 Hb_000617_250 Hb_001421_090--Hb_000617_250 Hb_024184_010 Hb_024184_010 Hb_001421_090--Hb_024184_010 Hb_001439_070 Hb_001439_070 Hb_001421_090--Hb_001439_070 Hb_000538_280 Hb_000538_280 Hb_001421_090--Hb_000538_280 Hb_005914_040 Hb_005914_040 Hb_001421_090--Hb_005914_040 Hb_000270_660 Hb_000270_660 Hb_000120_860--Hb_000270_660 Hb_001009_260 Hb_001009_260 Hb_000120_860--Hb_001009_260 Hb_000120_860--Hb_000000_310 Hb_000120_860--Hb_030959_010 Hb_005116_140 Hb_005116_140 Hb_000120_860--Hb_005116_140 Hb_000120_860--Hb_003682_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.25122 14.5435 11.5278 28.7818 6.41052 8.9618
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.11518 6.47851 3.12355 6.10661 32.8953

CAGE analysis