Hb_001627_040

Information

Type transcription factor
Description TF Family: SBP
Location Contig1627: 81970-87323
Sequence    

Annotation

kegg
ID rcu:RCOM_1468500
description LIGULELESS1 protein, putative
nr
ID XP_012080416.1
description PREDICTED: squamosa promoter-binding-like protein 6 isoform X1 [Jatropha curcas]
swissprot
ID Q94JW8
description Squamosa promoter-binding-like protein 6 OS=Arabidopsis thaliana GN=SPL6 PE=2 SV=2
trembl
ID A0A067K5H8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11753 PE=4 SV=1
Gene Ontology
ID GO:0005634
description squamosa promoter-binding-like protein 6

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14758: 57394-82336 , PASA_asmbl_14760: 82373-86922 , PASA_asmbl_14761: 86931-87164 , PASA_asmbl_14762: 87503-87599
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001627_040 0.0 transcription factor TF Family: SBP PREDICTED: squamosa promoter-binding-like protein 6 isoform X1 [Jatropha curcas]
2 Hb_001029_040 0.062554175 - - PREDICTED: uncharacterized protein LOC105641058 [Jatropha curcas]
3 Hb_001080_300 0.0771777683 - - PREDICTED: F-box protein SKIP17-like [Jatropha curcas]
4 Hb_004957_030 0.0815775207 - - hydroxyproline-rich glycoprotein [Populus trichocarpa]
5 Hb_007545_010 0.0880379857 - - HIV-1 rev binding protein, hrbl, putative [Ricinus communis]
6 Hb_000803_320 0.0885601578 transcription factor TF Family: PHD PREDICTED: histone-lysine N-methyltransferase ATX4 [Jatropha curcas]
7 Hb_000417_390 0.0891935199 - - PREDICTED: ER lumen protein-retaining receptor A [Jatropha curcas]
8 Hb_003125_220 0.0931982726 - - PREDICTED: CBS domain-containing protein CBSCBSPB1 [Jatropha curcas]
9 Hb_009178_060 0.0956384049 - - PREDICTED: uncharacterized aarF domain-containing protein kinase At4g31390, chloroplastic isoform X1 [Jatropha curcas]
10 Hb_024184_010 0.0974505705 - - PREDICTED: clustered mitochondria protein-like isoform X1 [Citrus sinensis]
11 Hb_001421_090 0.1029325417 - - hypothetical protein RCOM_1278080 [Ricinus communis]
12 Hb_000270_480 0.1036236506 - - Mannose-1-phosphate guanyltransferase alpha [Gossypium arboreum]
13 Hb_007313_040 0.108650597 - - hypothetical protein JCGZ_23401 [Jatropha curcas]
14 Hb_005192_010 0.1102860724 - - PREDICTED: U-box domain-containing protein 4 [Jatropha curcas]
15 Hb_009252_030 0.1104739074 - - PREDICTED: CASP-like protein 4A3 [Jatropha curcas]
16 Hb_001157_230 0.1105477807 - - Protein AFR, putative [Ricinus communis]
17 Hb_000270_390 0.1106815694 - - PREDICTED: uncharacterized protein DDB_G0271670 [Jatropha curcas]
18 Hb_009296_080 0.1115704704 - - PREDICTED: probable apyrase 7 isoform X1 [Jatropha curcas]
19 Hb_000300_510 0.1118436632 - - PREDICTED: uncharacterized protein LOC105632605 [Jatropha curcas]
20 Hb_005511_150 0.1118677 - - PREDICTED: uncharacterized aarF domain-containing protein kinase At1g71810, chloroplastic isoform X5 [Populus euphratica]

Gene co-expression network

sample Hb_001627_040 Hb_001627_040 Hb_001029_040 Hb_001029_040 Hb_001627_040--Hb_001029_040 Hb_001080_300 Hb_001080_300 Hb_001627_040--Hb_001080_300 Hb_004957_030 Hb_004957_030 Hb_001627_040--Hb_004957_030 Hb_007545_010 Hb_007545_010 Hb_001627_040--Hb_007545_010 Hb_000803_320 Hb_000803_320 Hb_001627_040--Hb_000803_320 Hb_000417_390 Hb_000417_390 Hb_001627_040--Hb_000417_390 Hb_001029_040--Hb_007545_010 Hb_003746_010 Hb_003746_010 Hb_001029_040--Hb_003746_010 Hb_001157_230 Hb_001157_230 Hb_001029_040--Hb_001157_230 Hb_138585_080 Hb_138585_080 Hb_001029_040--Hb_138585_080 Hb_022250_010 Hb_022250_010 Hb_001029_040--Hb_022250_010 Hb_001080_300--Hb_004957_030 Hb_000185_220 Hb_000185_220 Hb_001080_300--Hb_000185_220 Hb_001080_300--Hb_000417_390 Hb_001080_300--Hb_001029_040 Hb_001975_150 Hb_001975_150 Hb_001080_300--Hb_001975_150 Hb_015099_030 Hb_015099_030 Hb_004957_030--Hb_015099_030 Hb_001141_240 Hb_001141_240 Hb_004957_030--Hb_001141_240 Hb_004957_030--Hb_007545_010 Hb_006970_020 Hb_006970_020 Hb_004957_030--Hb_006970_020 Hb_003777_030 Hb_003777_030 Hb_007545_010--Hb_003777_030 Hb_000815_300 Hb_000815_300 Hb_007545_010--Hb_000815_300 Hb_011310_110 Hb_011310_110 Hb_007545_010--Hb_011310_110 Hb_007545_010--Hb_006970_020 Hb_000665_170 Hb_000665_170 Hb_007545_010--Hb_000665_170 Hb_000139_080 Hb_000139_080 Hb_007545_010--Hb_000139_080 Hb_002874_110 Hb_002874_110 Hb_000803_320--Hb_002874_110 Hb_000270_390 Hb_000270_390 Hb_000803_320--Hb_000270_390 Hb_009288_020 Hb_009288_020 Hb_000803_320--Hb_009288_020 Hb_000504_180 Hb_000504_180 Hb_000803_320--Hb_000504_180 Hb_009178_060 Hb_009178_060 Hb_000803_320--Hb_009178_060 Hb_006663_060 Hb_006663_060 Hb_000803_320--Hb_006663_060 Hb_000390_050 Hb_000390_050 Hb_000417_390--Hb_000390_050 Hb_000585_110 Hb_000585_110 Hb_000417_390--Hb_000585_110 Hb_000417_390--Hb_001029_040 Hb_015884_020 Hb_015884_020 Hb_000417_390--Hb_015884_020 Hb_074197_040 Hb_074197_040 Hb_000417_390--Hb_074197_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.16546 3.85609 3.13036 6.855 1.52289 3.09031
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.47234 1.92915 2.40295 2.80348 7.31441

CAGE analysis