Hb_000270_390

Information

Type -
Description -
Location Contig270: 297904-299424
Sequence    

Annotation

kegg
ID pop:POPTR_0015s08080g
description POPTRDRAFT_251873; hypothetical protein
nr
ID XP_012080156.1
description PREDICTED: uncharacterized protein DDB_G0271670 [Jatropha curcas]
swissprot
ID Q8BT14
description CCR4-NOT transcription complex subunit 4 OS=Mus musculus GN=Cnot4 PE=1 SV=2
trembl
ID A0A067KH63
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11540 PE=4 SV=1
Gene Ontology
ID GO:0008270
description ccr4-not transcription complex subunit 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28209: 296823-297280 , PASA_asmbl_28211: 297956-299661
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000270_390 0.0 - - PREDICTED: uncharacterized protein DDB_G0271670 [Jatropha curcas]
2 Hb_000803_320 0.0663454329 transcription factor TF Family: PHD PREDICTED: histone-lysine N-methyltransferase ATX4 [Jatropha curcas]
3 Hb_002768_060 0.0799620391 - - PREDICTED: probable beta-1,3-galactosyltransferase 2 isoform X1 [Jatropha curcas]
4 Hb_003544_160 0.0844218366 - - -
5 Hb_002874_110 0.0884987579 - - PREDICTED: uncharacterized protein LOC105637451 [Jatropha curcas]
6 Hb_000789_200 0.0939973184 - - mitochondrial processing peptidase alpha subunit, putative [Ricinus communis]
7 Hb_004317_060 0.0950137155 - - PREDICTED: testis-expressed sequence 10 protein isoform X2 [Jatropha curcas]
8 Hb_000358_050 0.0961175215 - - PREDICTED: uncharacterized protein LOC105633378 [Jatropha curcas]
9 Hb_009178_060 0.0968372986 - - PREDICTED: uncharacterized aarF domain-containing protein kinase At4g31390, chloroplastic isoform X1 [Jatropha curcas]
10 Hb_000363_300 0.0979767239 - - PREDICTED: protein ENHANCED DOWNY MILDEW 2 isoform X1 [Jatropha curcas]
11 Hb_000409_030 0.100238433 - - PREDICTED: uncharacterized protein LOC105642693 [Jatropha curcas]
12 Hb_000720_050 0.1010783768 - - PREDICTED: uncharacterized protein LOC105645857 isoform X1 [Jatropha curcas]
13 Hb_000504_180 0.1015171904 - - PREDICTED: heterogeneous nuclear ribonucleoprotein 1 [Jatropha curcas]
14 Hb_003106_190 0.1017392872 - - Mannosyl-oligosaccharide 1,2-alpha-mannosidase IA, putative [Ricinus communis]
15 Hb_135572_010 0.101912605 - - GTP-binding protein alpha subunit, gna, putative [Ricinus communis]
16 Hb_004143_160 0.1033674377 - - SAB, putative [Ricinus communis]
17 Hb_011485_060 0.1042112124 transcription factor TF Family: CAMTA PREDICTED: calmodulin-binding transcription activator 3 [Jatropha curcas]
18 Hb_122968_010 0.1059411727 - - hypothetical protein JCGZ_23576 [Jatropha curcas]
19 Hb_000359_210 0.1067886888 - - conserved hypothetical protein [Ricinus communis]
20 Hb_004480_100 0.1079336806 - - PREDICTED: calcium homeostasis endoplasmic reticulum protein [Jatropha curcas]

Gene co-expression network

sample Hb_000270_390 Hb_000270_390 Hb_000803_320 Hb_000803_320 Hb_000270_390--Hb_000803_320 Hb_002768_060 Hb_002768_060 Hb_000270_390--Hb_002768_060 Hb_003544_160 Hb_003544_160 Hb_000270_390--Hb_003544_160 Hb_002874_110 Hb_002874_110 Hb_000270_390--Hb_002874_110 Hb_000789_200 Hb_000789_200 Hb_000270_390--Hb_000789_200 Hb_004317_060 Hb_004317_060 Hb_000270_390--Hb_004317_060 Hb_000803_320--Hb_002874_110 Hb_009288_020 Hb_009288_020 Hb_000803_320--Hb_009288_020 Hb_000504_180 Hb_000504_180 Hb_000803_320--Hb_000504_180 Hb_009178_060 Hb_009178_060 Hb_000803_320--Hb_009178_060 Hb_006663_060 Hb_006663_060 Hb_000803_320--Hb_006663_060 Hb_001876_010 Hb_001876_010 Hb_002768_060--Hb_001876_010 Hb_004480_100 Hb_004480_100 Hb_002768_060--Hb_004480_100 Hb_002768_060--Hb_003544_160 Hb_002768_060--Hb_000789_200 Hb_002908_050 Hb_002908_050 Hb_002768_060--Hb_002908_050 Hb_004679_030 Hb_004679_030 Hb_002768_060--Hb_004679_030 Hb_002414_050 Hb_002414_050 Hb_003544_160--Hb_002414_050 Hb_003544_160--Hb_004679_030 Hb_001662_100 Hb_001662_100 Hb_003544_160--Hb_001662_100 Hb_003544_160--Hb_001876_010 Hb_000359_210 Hb_000359_210 Hb_003544_160--Hb_000359_210 Hb_002749_060 Hb_002749_060 Hb_002874_110--Hb_002749_060 Hb_073171_070 Hb_073171_070 Hb_002874_110--Hb_073171_070 Hb_002874_110--Hb_006663_060 Hb_011819_020 Hb_011819_020 Hb_002874_110--Hb_011819_020 Hb_002874_110--Hb_009288_020 Hb_027073_020 Hb_027073_020 Hb_000789_200--Hb_027073_020 Hb_000656_010 Hb_000656_010 Hb_000789_200--Hb_000656_010 Hb_000789_200--Hb_004480_100 Hb_000720_050 Hb_000720_050 Hb_000789_200--Hb_000720_050 Hb_001789_110 Hb_001789_110 Hb_000789_200--Hb_001789_110 Hb_002414_060 Hb_002414_060 Hb_004317_060--Hb_002414_060 Hb_001437_190 Hb_001437_190 Hb_004317_060--Hb_001437_190 Hb_084670_010 Hb_084670_010 Hb_004317_060--Hb_084670_010 Hb_007558_100 Hb_007558_100 Hb_004317_060--Hb_007558_100 Hb_000237_040 Hb_000237_040 Hb_004317_060--Hb_000237_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.45982 8.76432 5.22574 10.7235 5.74485 8.45888
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.9875 5.2028 5.9805 10.0083 17.8291

CAGE analysis