Hb_000417_170

Information

Type -
Description -
Location Contig417: 131378-134198
Sequence    

Annotation

kegg
ID rcu:RCOM_1250150
description hypothetical protein
nr
ID XP_012091806.1
description PREDICTED: uncharacterized protein LOC105649689 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JEC4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21589 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41243: 131455-134432 , PASA_asmbl_41244: 133427-133782
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000417_170 0.0 - - PREDICTED: uncharacterized protein LOC105649689 [Jatropha curcas]
2 Hb_030959_010 0.1044115017 - - cullin, putative [Ricinus communis]
3 Hb_009252_010 0.1139252855 - - PREDICTED: kinesin light chain [Jatropha curcas]
4 Hb_003746_010 0.1264048258 - - conserved hypothetical protein [Ricinus communis]
5 Hb_004097_090 0.1292642242 - - PREDICTED: uncharacterized protein LOC105634517 [Jatropha curcas]
6 Hb_000445_150 0.1294774757 - - PREDICTED: UDP-sugar pyrophosphorylase [Jatropha curcas]
7 Hb_005348_110 0.1305541162 - - PREDICTED: probable polygalacturonase [Jatropha curcas]
8 Hb_009674_050 0.1320807307 - - Endosomal P24A protein precursor, putative [Ricinus communis]
9 Hb_003994_300 0.1323601029 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000011_220 0.1371734448 - - PREDICTED: uncharacterized protein LOC105631313 [Jatropha curcas]
11 Hb_002596_080 0.1428226386 - - PREDICTED: probable sugar phosphate/phosphate translocator At5g04160 [Jatropha curcas]
12 Hb_005192_010 0.1456076826 - - PREDICTED: U-box domain-containing protein 4 [Jatropha curcas]
13 Hb_005228_040 0.1464424092 - - PREDICTED: uncharacterized protein At4g06598-like [Jatropha curcas]
14 Hb_005116_140 0.1469934807 - - PREDICTED: RAN GTPase-activating protein 1 [Jatropha curcas]
15 Hb_000684_310 0.1477997187 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g67720 [Jatropha curcas]
16 Hb_002611_010 0.150129087 - - amino acid transporter, putative [Ricinus communis]
17 Hb_001882_020 0.1502459167 - - PREDICTED: uncharacterized protein LOC105628417 [Jatropha curcas]
18 Hb_002129_020 0.1505201713 - - PREDICTED: probable beta-1,4-xylosyltransferase IRX14 [Jatropha curcas]
19 Hb_000120_860 0.1515798121 - - nucellin, putative [Ricinus communis]
20 Hb_001195_090 0.1555526686 - - PREDICTED: isoflavone reductase-like protein [Jatropha curcas]

Gene co-expression network

sample Hb_000417_170 Hb_000417_170 Hb_030959_010 Hb_030959_010 Hb_000417_170--Hb_030959_010 Hb_009252_010 Hb_009252_010 Hb_000417_170--Hb_009252_010 Hb_003746_010 Hb_003746_010 Hb_000417_170--Hb_003746_010 Hb_004097_090 Hb_004097_090 Hb_000417_170--Hb_004097_090 Hb_000445_150 Hb_000445_150 Hb_000417_170--Hb_000445_150 Hb_005348_110 Hb_005348_110 Hb_000417_170--Hb_005348_110 Hb_005116_140 Hb_005116_140 Hb_030959_010--Hb_005116_140 Hb_000120_860 Hb_000120_860 Hb_030959_010--Hb_000120_860 Hb_030959_010--Hb_009252_010 Hb_009674_050 Hb_009674_050 Hb_030959_010--Hb_009674_050 Hb_002611_010 Hb_002611_010 Hb_030959_010--Hb_002611_010 Hb_009252_010--Hb_009674_050 Hb_009252_010--Hb_000120_860 Hb_005228_040 Hb_005228_040 Hb_009252_010--Hb_005228_040 Hb_000684_390 Hb_000684_390 Hb_009252_010--Hb_000684_390 Hb_009252_010--Hb_005348_110 Hb_001029_040 Hb_001029_040 Hb_003746_010--Hb_001029_040 Hb_003746_010--Hb_009674_050 Hb_005192_010 Hb_005192_010 Hb_003746_010--Hb_005192_010 Hb_001882_020 Hb_001882_020 Hb_003746_010--Hb_001882_020 Hb_003682_070 Hb_003682_070 Hb_003746_010--Hb_003682_070 Hb_009252_030 Hb_009252_030 Hb_003746_010--Hb_009252_030 Hb_000300_510 Hb_000300_510 Hb_004097_090--Hb_000300_510 Hb_001627_040 Hb_001627_040 Hb_004097_090--Hb_001627_040 Hb_004097_090--Hb_005192_010 Hb_001421_090 Hb_001421_090 Hb_004097_090--Hb_001421_090 Hb_004097_090--Hb_000120_860 Hb_002596_080 Hb_002596_080 Hb_000445_150--Hb_002596_080 Hb_003994_300 Hb_003994_300 Hb_000445_150--Hb_003994_300 Hb_002157_270 Hb_002157_270 Hb_000445_150--Hb_002157_270 Hb_001584_130 Hb_001584_130 Hb_000445_150--Hb_001584_130 Hb_011310_040 Hb_011310_040 Hb_000445_150--Hb_011310_040 Hb_005348_110--Hb_009674_050 Hb_005348_110--Hb_003746_010 Hb_001216_110 Hb_001216_110 Hb_005348_110--Hb_001216_110 Hb_000011_220 Hb_000011_220 Hb_005348_110--Hb_000011_220 Hb_010175_030 Hb_010175_030 Hb_005348_110--Hb_010175_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.62609 4.36695 2.83462 16.7565 2.47486 3.38678
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.29957 3.8832 2.82842 2.7972 17.0495

CAGE analysis